Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_O20
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899...    32   0.71 
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    30   2.9  
01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141...    29   5.0  
09_04_0626 - 19057771-19058031,19058850-19058956,19059885-19059960     29   6.6  
11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239     28   8.7  
03_04_0220 - 18741485-18741915,18742007-18742190                       28   8.7  

>02_04_0628 +
           24589313-24589472,24589604-24589765,24589850-24589983,
           24590108-24590275,24590481-24590562,24590734-24591512
          Length = 494

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 584 RLXFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 492
           R+  CD  PS  R   RL C CSYQ    +SPR
Sbjct: 29  RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61


>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
            19963215-19963320,19963400-19963574,19963849-19963951,
            19964382-19964636,19964726-19964803,19964908-19965000,
            19965091-19965222,19965898-19966002,19966127-19966201,
            19966284-19966340,19966419-19966532,19966613-19966756,
            19966886-19966969,19967071-19967164,19967244-19967369,
            19967507-19967580,19967672-19967875,19968234-19968388,
            19968860-19968947,19969505-19969730,19970235-19970286,
            19970766-19970958,19973221-19973314,19973744-19973788,
            19974874-19974896
          Length = 1210

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
 Frame = +2

Query: 308  GYNREXFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDW--ANKNAQAAIDINRQIG--- 472
            G   E   D R +L G+     + G  G+    GG      A    +A  + +  +    
Sbjct: 1073 GNELELAGDHREELGGRGDELELAGDHGEELGGGGTSSSSPATTGRRAMEETSSSLPAAL 1132

Query: 473  GRSGMTASGSGVWD---LDKNTHISAGGMVSKE-FGHRRXDVGLQAEIRH 610
            G  G T SG G WD   L+    +  GG   +   G RR  +GL + I H
Sbjct: 1133 GTGGGTESGGGAWDELELELADGVRRGGKERRRAAGRRRRALGLGSGIGH 1182


>01_01_0166 +
           1412918-1413309,1413845-1414006,1414534-1414720,
           1415221-1415646,1416028-1416036,1416361-1416768,
           1417397-1417654
          Length = 613

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 587 RRLXFCDQIPSRPYRRLRCGCSYQDPTHRSPRLSFQICLR 468
           +R+  CD  P+RP+R + CG  +    +  P   F+  +R
Sbjct: 146 KRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKFKHSIR 185


>09_04_0626 - 19057771-19058031,19058850-19058956,19059885-19059960
          Length = 147

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 449 WRLVRSCWPSPDVHRS*CCHLRVLRPWCRKPGRLVDRG 336
           WR + S  P  D  R+ C     LR W R P  ++  G
Sbjct: 64  WRHIHSLMPLRDAARAACISQAFLRSWRRYPNLILTAG 101


>11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239
          Length = 126

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/81 (27%), Positives = 25/81 (30%)
 Frame = +2

Query: 263 RHFGXETXXGLFGKAGYNREXFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQ 442
           R  G     G     G  R      RGQ  G A  T      G +    GRLD   +   
Sbjct: 18  RRAGCSGGVGRRAGGGVARRPRRPARGQRPGDACATEAAAAAGGAREGRGRLDLRERRC- 76

Query: 443 AAIDINRQIGGRSGMTASGSG 505
              D         G+TA G G
Sbjct: 77  ---DARAAAAAACGLTAGGGG 94


>03_04_0220 - 18741485-18741915,18742007-18742190
          Length = 204

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 492 PRAPVCGI-LIRTPTSQPAVWSRRNLVTEXQTSVFKQRSGMSGDCQHNPII 641
           P AP C + L  +P S PAV  R+  +     S+    SG +   + +P++
Sbjct: 149 PEAPSCDLGLCLSPGSPPAVGERKPALRPGTPSMSSDESGTTTGGERDPVL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,723,747
Number of Sequences: 37544
Number of extensions: 391630
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)