Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_O08
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       29   0.66 
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    29   0.87 
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   6.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   8.1  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 277 STAKLQDYRLDFNMYTELWNGNAATIVEDPGEYVWGDLW 393
           +TA   D          L+    A IV D G Y WGD W
Sbjct: 156 NTAHESDLHDSLQEAINLYPDTCAVIVRDHGIYCWGDTW 194


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 187 QYEDKFLYFAYGSNLLAKRIHINNPT--AIFYSTAKLQD 297
           +Y   FLY+ YG+ ++ KR H N     A  Y T  L++
Sbjct: 105 KYYSNFLYWWYGAQIVQKRFHYNELQYGAALYKTGLLKN 143


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/97 (19%), Positives = 45/97 (46%)
 Frame = +1

Query: 280 TAKLQDYRLDFNMYTELWNGNAATIVEDPGEYVWGDLWLINNSDLKSLDEQELVGSGGYF 459
           T K  +  L +++ T+  + +  ++V+D  E +      ++  +L  ++++ ++  G   
Sbjct: 105 TFKPVEANLAYDVDTDSEDLDEESVVKDTEEIIEQAQHDVSLRNLSGIEDENIIDDG--- 161

Query: 460 ARNVTVTTPGGKQLQARTYQETVDPPKLKEGELLPED 570
                      K+ +A  + +T   P+LK G+ LP D
Sbjct: 162 ----ETAINEQKKREANVFSDTQSAPQLKSGKALPAD 194


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = -1

Query: 566 SGNNSPSFNLGGSTVSWYVLACSCFPPGVVTVTFLAK*PPEPTSSCSSRLFKSLLFISQR 387
           SG+NSP  N   ST S+     +  P G +T T  +   P     C S     LLF   R
Sbjct: 243 SGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNS---PNNGIHCHSTSALDLLFHRDR 299

Query: 386 SPHTY 372
               +
Sbjct: 300 EQRLF 304


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 569 SSGNNSPSFNLGGSTVSW 516
           +SGN +P++N+G  T +W
Sbjct: 876 NSGNKTPAWNVGNKTPAW 893


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 425 SRLFKSLLFISQRSPHT--YSPGSSTIVAALPFQSSVYMLKSN 303
           S+L   LLF  Q  P    YSP +STIV  L  + S +    N
Sbjct: 320 SQLVDILLFCEQLHPDIPFYSPKTSTIVQELQSKRSAFTATMN 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,497
Number of Sequences: 5004
Number of extensions: 70062
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)