Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_O06
(1278 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 31 1.3
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 30 3.1
Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 5.3
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 5.3
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 29 5.3
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 9.3
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 33.5 bits (73), Expect = 0.33
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Frame = +1
Query: 271 PXXPTGPXXRXGCPAGAXRLLXSGXXG--GXXGGXAARXXLXPARXPXXXGRAXXGRSVS 444
P P GP R G P A G G G G A P G+ G + +
Sbjct: 162 PAGPKGPDGRPGQPGSAGHPGAPGQPGSKGNNGAPGAAGGPGQPGRPGKDGQRGKGSAGA 221
Query: 445 PXXXXRGGPAXXPXXPGXAG 504
P + GPA PG G
Sbjct: 222 PGAPGKAGPAGPAGGPGNNG 241
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/85 (27%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Frame = -2
Query: 503 PALPGXXGXXAGPPRXXXXGXTLRPXXARPXXXGXRAGXRXXRAAXPPXXPPXXPXXXSR 324
P PG G PP+ T P P AG + P PP P
Sbjct: 110 PGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPPGPAGPPGPQGNKGPLGPPGPPGPEGP 169
Query: 323 XAPAGQ--PXRXXGPVGXXGXXXXP 255
AG P GP G G P
Sbjct: 170 NGTAGNKGPAGPPGPGGKPGPAGPP 194
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/83 (27%), Positives = 25/83 (30%)
Frame = -2
Query: 503 PALPGXXGXXAGPPRXXXXGXTLRPXXARPXXXGXRAGXRXXRAAXPPXXPPXXPXXXSR 324
P PG G PP+ T P P AG P PP P
Sbjct: 112 PGAPGLNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKGPLGPPGPP---GP 168
Query: 323 XAPAGQPXRXXGPVGXXGXXXXP 255
P G+P GP G G P
Sbjct: 169 EGPNGEPGN-KGPAGPPGPGGKP 190
>Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical
protein C16D6.1 protein.
Length = 173
Score = 29.5 bits (63), Expect = 5.3
Identities = 19/77 (24%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Frame = -3
Query: 640 PXLPPAHAXGHXALXXXPXGE--PXAXXXXXXXPXPXXXPGRXXVGXXPXXRGXXAXPLX 467
P PP H + P G P P P P +G P P+
Sbjct: 89 PAYPPGHPLHMPGMTMMPMGPVGPPMMAGMPMRPMPPLPP-MTPMGSMPHPNDGGPHPMM 147
Query: 466 RPGXPXXEXHSXPGXXG 416
PG P + PG G
Sbjct: 148 LPGAPMTQQRQRPGIRG 164
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 29.5 bits (63), Expect = 5.3
Identities = 24/86 (27%), Positives = 26/86 (30%)
Frame = -2
Query: 527 RPTQXGXXPALPGXXGXXAGPPRXXXXGXTLRPXXARPXXXGXRAGXRXXRAAXPPXXPP 348
RP G P PG G PP+ T P A P G + P PP
Sbjct: 114 RPGTPGR-PGAPGAPGHPGKPPQSPCEPLTPPPCPACPPGPPGAPGAPGKPGSEGPPGPP 172
Query: 347 XXPXXXSRXAPAGQPXRXXGPVGXXG 270
GQP GP G G
Sbjct: 173 GHDGPNGGPGQPGQPG-PHGPNGHPG 197
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.5 bits (63), Expect = 5.3
Identities = 26/91 (28%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Frame = +1
Query: 271 PXXPTGPXXRXGCPA--GAXRLLXSGXXGGXXGGXAARXXLXPARXPXXXGR-AXXGRSV 441
P P+G R G P G G GG G P P + GR
Sbjct: 161 PAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRGEPGTEYKPGQPGRPG 220
Query: 442 SPXXXXRGGPAXXPXXPGXAG--XXPXXVGR 528
P GPA P PG G P GR
Sbjct: 221 PPGPRGEAGPAGQPGSPGNDGESGKPGNAGR 251
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 29.5 bits (63), Expect = 5.3
Identities = 24/83 (28%), Positives = 25/83 (30%)
Frame = -2
Query: 503 PALPGXXGXXAGPPRXXXXGXTLRPXXARPXXXGXRAGXRXXRAAXPPXXPPXXPXXXSR 324
P +PG G AGP R G T P P G P P
Sbjct: 198 PGIPGNQGEDAGPGRQGMPGPTGPPGPRGPPGETGDEGEGGPDGI--PMEKKSPPGPRGP 255
Query: 323 XAPAGQPXRXXGPVGXXGXXXXP 255
PAG P GP G G P
Sbjct: 256 PGPAG-PDGPQGPEGRSGKQGPP 277
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 28.7 bits (61), Expect = 9.3
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Frame = -2
Query: 494 PGXXGXXAGPPRXXXXGXTLRPXXARPXXXGXRAGXRXXRAAXP--PXXPPXXPXXXSRX 321
PG G G P T P P AG AA P P PP P +
Sbjct: 162 PGAPGPN-GQPGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPPGPPGPPGPPGKD 220
Query: 320 APAGQPXRXXGP 285
AG P GP
Sbjct: 221 GEAGAPGAPGGP 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,761
Number of Sequences: 27780
Number of extensions: 101148
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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