Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_O05
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0799 - 6273520-6274008,6274137-6274151                           33   0.23 
05_06_0074 + 25375431-25375631,25375785-25376195,25376474-253765...    32   0.70 
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    31   0.93 
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791...    31   1.2  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     30   2.8  
01_05_0560 - 23288078-23288370,23288448-23288733                       30   2.8  
12_02_1193 + 26891619-26892456,26892545-26893884                       29   5.0  
05_04_0030 - 17338646-17338669,17338817-17339386                       29   6.6  
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    29   6.6  
05_02_0090 + 6507378-6507481,6507495-6507627,6507658-6507715,650...    28   8.7  

>07_01_0799 - 6273520-6274008,6274137-6274151
          Length = 167

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 217 PACRTVRVIGRCVGGGPEGRLDEPLARSLSKE 122
           P CRT+ V G+C+GGG  G +DE + R   ++
Sbjct: 67  PRCRTM-VKGQCIGGGAAGNVDEQVWRDCCRQ 97


>05_06_0074 +
           25375431-25375631,25375785-25376195,25376474-25376589,
           25377016-25377064,25377722-25378247,25378339-25379060
          Length = 674

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
 Frame = -3

Query: 609 IPRNQKVLIILPQFFLILRRMSSVTVSHINIYWLG--VKPEEALEQ---AVSLEGTKTAG 445
           IP+ +K++ IL   FL      S+T S +N+Y++   +  ++ L+     ++L G+   G
Sbjct: 231 IPQ-KKLIAILYVSFLRSTSPQSLTCSMVNLYYIDHELNIDDFLQDDDYKINLPGSNPDG 289

Query: 444 PLCYGGSRSAGQVQYQLYDVNVQWTPRYFLD 352
           P    G    GQ+++Q Y++ +   P  F+D
Sbjct: 290 PNTMQG---IGQLEHQQYNLPLDLPPNSFVD 317


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 255  PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 395
            P  P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>02_05_1010 +
           33477878-33478446,33478709-33478834,33478905-33479190,
           33479293-33479484,33479641-33479870,33480379-33480718,
           33481673-33481789,33481940-33482014
          Length = 644

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/98 (21%), Positives = 46/98 (46%)
 Frame = +1

Query: 289 FLRKSTTCSSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLE 468
           F + ST CS ++    +    ++K + RP+ +     +   T+ +   +T+   G+C  +
Sbjct: 409 FHQSSTLCS-VEFALEYCYFLVEKKSTRPIYLDDFSKLSYCTTLAEMAITEIRGGYCYQK 467

Query: 469 GNCLFQRFLRFNPKPIYIDMGNRYRRHASEDQEELRQY 582
            +  F R     P P   D+ +   R+ ++D+ + RQ+
Sbjct: 468 CHPRF-RHRDMLPPPDSADLSSSRSRYTNDDEHDARQH 504


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 152 IQPTFRXTANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYRRP 280
           +QP+   TAN  P N  S TS P  ++A ++  CSS A    P
Sbjct: 153 VQPSIIVTANPPPRNVVSTTSVPQNSIA-AKLACSSVAAASPP 194


>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 252 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 344
           +PR P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>12_02_1193 + 26891619-26892456,26892545-26893884
          Length = 725

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 207 RQAGQEPLWLYQGDNVPRA-PSTADHPILPSK---IDDVQLDPNRRYV--RSVTNPENNE 368
           RQA     W+Y G+  PRA P  AD    PS+      V+L P +R V   S ++ ++ +
Sbjct: 308 RQAAGRANWVYNGELPPRANPQKADDEAGPSQKRMRGQVKLAPKKRRVPPSSDSDADDED 367

Query: 369 ASIEH 383
            + EH
Sbjct: 368 DAEEH 372


>05_04_0030 - 17338646-17338669,17338817-17339386
          Length = 197

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -3

Query: 600 NQKVLIILPQFFLILRRMSSVTVSHINIY-WLGVKPEEALEQAVSLEGTKTAGPL 439
           ++ ++ +LPQ+F I+  ++ V V    I+ W   K + AL  A++L G    GP+
Sbjct: 55  DRSLMWLLPQWFCIIAAVAMVAVFAAEIFPWCESKGDVAL-CAIALAGALLMGPI 108


>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 457 CTLEGNCLFQRFLRFNPK-PIYID 525
           C   G+ LF  FLRFNPK P + D
Sbjct: 84  CAPLGHVLFDEFLRFNPKNPYWFD 107


>05_02_0090 +
           6507378-6507481,6507495-6507627,6507658-6507715,
           6508756-6508814,6509127-6509169,6509325-6509422,
           6509619-6509744
          Length = 206

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 476 ACSNASSGLTPSQYILIWETVTDDMRRRIKKNC 574
           A  N  +G    +Y ++WE +++ +  R +KNC
Sbjct: 155 AYQNYDAGNRQFRYNIVWEDISEKLTTRNRKNC 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,767,686
Number of Sequences: 37544
Number of extensions: 498984
Number of successful extensions: 1308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)