Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_O04
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    30   0.39 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   6.4  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   6.4  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   8.5  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 325 TASGMSFLKSPETASQGDVSKKHPIKAFRESI 230
           ++ G+ FL SPE A+Q  +S+KH   A  +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 156 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLETSPCDAVSGDFKKDIPEAVAE 332
           F   + +  Y ++ND       + +ID S+K+F  C  E +   +  GD  +D   A  +
Sbjct: 29  FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85

Query: 333 ACGKCTPAQKHLFKRF 380
              +      HL ++F
Sbjct: 86  VQNEYHQKSNHLREKF 101


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 156 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 266
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 120 KMKGFYVLCFALFAAVYCKETYS 188
           ++ G ++LC  L A V CKE +S
Sbjct: 580 RLSGHFLLCAKLGAKVRCKELFS 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,238
Number of Sequences: 5004
Number of extensions: 53065
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)