Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N24
         (981 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    65   2e-11
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   5.3  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   5.3  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   9.3  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 27/47 (57%), Positives = 31/47 (65%)
 Frame = +2

Query: 272 GFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFD 412
           GFH+H+ GD + GC S G HFNPE K HG      RHVGDLGN+  D
Sbjct: 45  GFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESD 91



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 26/53 (49%), Positives = 32/53 (60%)
 Frame = +3

Query: 432 STWLDDQISLSGPHGIIGRAVVLHEKADDYGXSDHPDSNXTGNTGGRVACGVI 590
           +T+ D  ISL G + IIGR +V+H   DD G     +S  TGN G R ACGVI
Sbjct: 98  TTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVI 150


>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 78

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 309 PPLRSP--FSWTWKPYSPGGSPVMPTLNVNLPI 217
           PPLR P  F    +P+S GG+  +  LN+  P+
Sbjct: 37  PPLRGPAGFPVNPRPFSHGGNANLDRLNLKEPV 69


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 294 PFSWTWKPYSPGGSPVMPTLNVNL 223
           P SW ++  +PGG P+   L VNL
Sbjct: 371 PGSWIFRKLTPGGIPLNAILLVNL 394


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 133 HGFTTPSRAIAVLST 177
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,873
Number of Sequences: 5004
Number of extensions: 46663
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)