Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_N24
(981 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 89 7e-18
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 88 1e-17
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 87 3e-17
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 85 8e-17
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 40 0.003
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.11
01_01_0389 - 3013119-3013691 31 1.4
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 30 3.2
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 5.7
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 29 7.5
03_06_0343 + 33274329-33274981,33275197-33276121 28 9.9
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 88.6 bits (210), Expect = 7e-18
Identities = 41/95 (43%), Positives = 54/95 (56%)
Frame = +2
Query: 122 RRLIMASPRRPAPLPFYPQKRLEATSHSLRFKMGRFTFRVGITGLPPGEYGFHVHEKGDL 301
R L++A + A ++E + G T V +TGL PG +GFH+HE GD
Sbjct: 43 RALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDT 102
Query: 302 SGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVV 406
+ GC+STG HFNP + HG P D RH GDLGN+V
Sbjct: 103 TNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIV 137
Score = 66.5 bits (155), Expect = 3e-11
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +3
Query: 426 AGSTWLDDQISLSGPHGIIGRAVVLHEKADDYGXSDHPDSNXTGNTGGRVACGVI 590
A +T +D QI LSGP+ ++GRA V+HE DD G H S TGN GGR+ACGV+
Sbjct: 144 AEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVV 198
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 87.8 bits (208), Expect = 1e-17
Identities = 38/86 (44%), Positives = 53/86 (61%)
Frame = +2
Query: 185 LEATSHSLRFKMGRFTFRVGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHP 364
++ T H ++ G T ++GL PG +GFH+H GD + GC+STG H+NP K+HG P
Sbjct: 132 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAP 191
Query: 365 NDVNRHVGDLGNVVFDENHYSRIDLV 442
D RH GDLGNV E+ + I +V
Sbjct: 192 EDETRHAGDLGNVTAGEDGVANIHVV 217
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = +3
Query: 441 LDDQISLSGPHGIIGRAVVLHEKADDYGXSDHPDSNXTGNTGGRVACGVI 590
+D QI L+GP+ IIGRAVV+H DD G H S TGN GGRVACG+I
Sbjct: 217 VDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 266
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 86.6 bits (205), Expect = 3e-17
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +2
Query: 245 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 424
+TGL PG +GFH+H GD + GC STG HFNP +K HG P+D RHVGDLGN+V +++
Sbjct: 44 VTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGV 103
Query: 425 SRIDLVRRPDLAIGSARHHRQSGGA 499
+ I + DL I + H G A
Sbjct: 104 ADIFI---KDLQISLSGPHSILGRA 125
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3
Query: 444 DDQISLSGPHGIIGRAVVLHEKADDYG 524
D QISLSGPH I+GRAVV+H +DD G
Sbjct: 110 DLQISLSGPHSILGRAVVVHADSDDLG 136
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 85.0 bits (201), Expect = 8e-17
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = +2
Query: 245 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNV 403
++GL PG +GFHVH GD + GC+STG HFNP K+HG P D NRH GDLGN+
Sbjct: 34 VSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNI 86
Score = 66.1 bits (154), Expect = 4e-11
Identities = 30/49 (61%), Positives = 33/49 (67%)
Frame = +3
Query: 444 DDQISLSGPHGIIGRAVVLHEKADDYGXSDHPDSNXTGNTGGRVACGVI 590
D QI L+G H IIGRAVV+H DD G H S TGN GGRVACG+I
Sbjct: 100 DSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 148
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +2
Query: 248 TGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNV 403
+GL PG++G+ ++E GDL+ G STG +NP D+ N+ +GDLG +
Sbjct: 197 SGLSPGKHGWSINEFGDLTRGAESTGKVYNP--SDYRS----NKPLGDLGTL 242
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.11
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 230 TFRVGITGLPPGEYGFHVHEKGDLSGGCLSTG 325
T + ++GL P +GFHVH G + GC+ G
Sbjct: 38 TVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>01_01_0389 - 3013119-3013691
Length = 190
Score = 31.1 bits (67), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 451 RSRYRVRTASSAERWCSTRKLMITAXVTIRTP 546
RSR+R R +AERW S + + TA +++P
Sbjct: 7 RSRFRERVVEAAERWESVGESLATALTHLKSP 38
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 63 SQRENKNAASTHIPGCDRSGDGSSWLHHAVPRHCR 167
S+ KN A+ + G D G SWL +PR R
Sbjct: 249 SRHSVKNGAADQLTGVDEEGHRLSWLTETIPRMLR 283
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 178 LWIERQWRGTAW*SHDEPSP 119
LW ++W TAW S D+PSP
Sbjct: 173 LWSGQEWFITAWRSADDPSP 192
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 28.7 bits (61), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 534 GHSCRNHQLSRGAPPLCR*CRADPI 460
G + +H+ GAPPL R C A P+
Sbjct: 109 GENLNHHRSPAGAPPLTRLCAAGPV 133
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 86 CFNSH--SWLRSLWRRLIMASPRRPAPLPFYPQKRLEATSHSLRFKMGR 226
C SH S++ SLW ++ P+ L P+K+ E FK G+
Sbjct: 226 CVRSHFRSYMCSLWTEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGK 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,543
Number of Sequences: 37544
Number of extensions: 386774
Number of successful extensions: 1097
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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