Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N23
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    31   0.24 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.96 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.9  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   6.8  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    26   9.0  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   9.0  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   9.0  

>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 325 IPIAVSD--EIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQ 167
           IP+A++D  E+V+   DD + ++ +      N R+    G+S +EPR R   SG+
Sbjct: 238 IPLAMNDLFEMVENNSDDDTFQIRISYLEIYNERIRDLIGNSDEEPRIRENASGE 292


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 522 KSSENVSWKLIPLWENNRVYFKIYSVRR--HQYLXLGTGTDGENXHSVYGD 668
           K   ++ +K IPL++NN    KI +V R   + + +GT  +G N  S   D
Sbjct: 249 KECVDIFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNGANSSSTRQD 299


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 28/119 (23%), Positives = 52/119 (43%)
 Frame = +3

Query: 198 SSMLSPLPITTRLFL*FCCSRNNRVEASSRIPSTISSETAIGMY*SSPTNCGSGRVRKSS 377
           SS+ S  P+T+  F     S ++   +S    S+ SS T      ++PT+  S  +  SS
Sbjct: 162 SSLSSSDPLTSSTF----SSLSSSTSSSQPSVSSTSSSTFSS---AAPTSTSSSYLSSSS 214

Query: 378 NTTSLFSLDRCYPRATSRSSTRETILPSNSGAAXDSDNDRIAYGDANDKSSENVSWKLI 554
             +S  S         + SS   + +PS S ++  + +   +   ++  SS + S  +I
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSII 273


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 111 RPAMLAASAGLIDLDINDSCPLRPERKRGSSMLSPLPI 224
           RP  + +S+    LD     PL+P+R RG   L PLP+
Sbjct: 128 RPPKIKSSSPSTKLDD----PLKPKRGRGRPRLHPLPV 161


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 153 DINDSCPLRPERKRGSSMLSP 215
           +IN++ PL PER+  SS L P
Sbjct: 97  EINETRPLLPEREEHSSQLPP 117


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 242 LILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVK 379
           +IL LEK  +  +++  VNN I   +R++   A   +I +G+ IVK
Sbjct: 45  VILALEKVVTSKLLKPRVNNRIGSVDRHI-GIATTGFIPDGQHIVK 89


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 253 QQNQRNSRVVIGSGDSIDEPRFRSGRSGQESLMSKSIRPALAASIAG 113
           +QN  +S   +G G SI +   R   SG     +++ R A+  SIAG
Sbjct: 376 RQNLHSSSTAVGDGASIHQNVARRAMSGN----ARAYRQAVETSIAG 418


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 22  TIGNSLRFDQTYLGCQLPRESR*SFXVVFLDLRCWRPAPVLL 147
           T+ N++ FD+  +  Q   +    F VVF DL+C   +  LL
Sbjct: 42  TVNNTVTFDRYTMQYQEATQYSIVFVVVFQDLKCMAYSQSLL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,060
Number of Sequences: 5004
Number of extensions: 53994
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)