Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N23
         (952 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0290 - 23879064-23880035                                         35   0.11 
10_06_0170 + 11431540-11432259,11434552-11434644,11434739-114348...    31   1.8  
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676     30   2.4  
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    30   2.4  

>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +3

Query: 438 TRETILPSNSGAAXDSDNDRIAYGDANDKSSENVSWKLIPLWENNRVYFKIYSVRRHQYL 617
           T++   PSN G   DS  +  A G  N   S N  W ++P W N     +++S R  Q  
Sbjct: 248 TKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVP-WLN-----ELFSTREAQNA 301

Query: 618 XLGTGTDGENXHS 656
             G  TD ++ H+
Sbjct: 302 G-GVSTDQQSPHT 313


>10_06_0170 +
           11431540-11432259,11434552-11434644,11434739-11434806,
           11434873-11435011,11435179-11435229,11435600-11435675,
           11436216-11436274
          Length = 401

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 351 GSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILPSNSGA 473
           G GR R     +   + DRCY RA   +  R T +P   GA
Sbjct: 17  GGGRRRWQKRLSPTLARDRCYTRAFRSAGLRPTAVPLPDGA 57


>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
          Length = 365

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 463 FDGKIVSLVDDLDVALG*HLSKLNREVVFDDFLTLP 356
           F+ K+V LVD  +   G H + +N   +FDD L  P
Sbjct: 253 FNQKLVGLVDQFNTLPGAHFTYINIYGIFDDILGAP 288


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 486 DNDRIAYGDANDKSSENVSWKLIPLWENNRVYFKIYSVRRHQYLXLGTGTDG 641
           D DR      +      +  +LIP+W  + VYF   +  +  ++  GT TDG
Sbjct: 367 DGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYFIANTQAQTTFVQQGTKTDG 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,530,653
Number of Sequences: 37544
Number of extensions: 383483
Number of successful extensions: 1117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)