Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N23
         (952 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    34   0.13 
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    34   0.13 
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    31   1.2  
S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.        30   2.1  
S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.        30   2.1  
AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated...    30   2.1  
AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated...    30   2.1  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    30   2.8  
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    29   4.9  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    29   4.9  
AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    28   8.5  
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    28   8.5  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    28   8.5  

>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 36/130 (27%), Positives = 49/130 (37%)
 Frame = +3

Query: 87  MKFXGCFSRPAMLAASAGLIDLDINDSCPLRPERKRGSSMLSPLPITTRLFL*FCCSRNN 266
           M   G  + P   AAS G     + + C +R         LS    +T  F         
Sbjct: 38  MAIHGVETEPGQTAASTGWTSASMTNLCRVRSSLGHSDPQLSSS--STNSF--------- 86

Query: 267 RVEASSRIPSTISSETAIGMY*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRE 446
               SS  P+T SS TA+  + +S  N          ++TS  +L RC  R+  R   R 
Sbjct: 87  NTSTSSLHPATKSSTTALSSFSTSSANRSPANRPSLHSSTSPVTLQRC--RSPMRVPQRS 144

Query: 447 TILPSNSGAA 476
           T    N GAA
Sbjct: 145 TSSSHNFGAA 154


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 36/130 (27%), Positives = 49/130 (37%)
 Frame = +3

Query: 87  MKFXGCFSRPAMLAASAGLIDLDINDSCPLRPERKRGSSMLSPLPITTRLFL*FCCSRNN 266
           M   G  + P   AAS G     + + C +R         LS    +T  F         
Sbjct: 38  MAIHGVETEPGQTAASTGWTSASMTNLCRVRSSLGHSDPQLSSS--STNSF--------- 86

Query: 267 RVEASSRIPSTISSETAIGMY*SSPTNCGSGRVRKSSNTTSLFSLDRCYPRATSRSSTRE 446
               SS  P+T SS TA+  + +S  N          ++TS  +L RC  R+  R   R 
Sbjct: 87  NTSTSSLHPATKSSTTALSSFSTSSANRSPANRPSLHSSTSPVTLQRC--RSPMRVPQRS 144

Query: 447 TILPSNSGAA 476
           T    N GAA
Sbjct: 145 TSSSHNFGAA 154


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 214 GDSIDEPRFRSGRSGQESLMSKSIRPALAASIAGRE 107
           GDS+DE R RSG++   SL S S++     S A  E
Sbjct: 390 GDSLDESRLRSGKTDLVSLRSDSLKATKRRSWAASE 425


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 354 SGRVRKSSNTTSLFSLDRCYPRATSRSSTRET 449
           SG+ ++S++ T+L +LD   PR+ SR ST  T
Sbjct: 123 SGKFKQSTSATNLGALDNMMPRSGSRGSTPPT 154


>S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.
          Length = 919

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 FCCSRNNRVEASSRIPSTISSETAIGMY*SSP 341
           FCC R N  ++    P  ++SE A G+Y S P
Sbjct: 360 FCCKRGNSKKSKPLKPQKMNSEKAGGIYYSEP 391


>S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.
          Length = 947

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 FCCSRNNRVEASSRIPSTISSETAIGMY*SSP 341
           FCC R N  ++    P  ++SE A G+Y S P
Sbjct: 388 FCCKRGNSKKSKPLKPQKMNSEKAGGIYYSEP 419


>AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated
           protein 5, isoform b protein.
          Length = 567

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 FCCSRNNRVEASSRIPSTISSETAIGMY*SSP 341
           FCC R N  ++    P  ++SE A G+Y S P
Sbjct: 360 FCCKRGNSKKSKPLKPQKMNSEKAGGIYYSEP 391


>AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated
           protein 5, isoform a protein.
          Length = 919

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 FCCSRNNRVEASSRIPSTISSETAIGMY*SSP 341
           FCC R N  ++    P  ++SE A G+Y S P
Sbjct: 360 FCCKRGNSKKSKPLKPQKMNSEKAGGIYYSEP 391


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 225 TTRLFL*FCCSRNNRVEASSRIPSTISSETAIGM-Y*SSPTNCGSGRVRKSSNTTSLFSL 401
           TT +F     +R  R +   R  ST  S+T   + Y S+PT+  S    KSS +  + + 
Sbjct: 504 TTNIFTSTKVTREPREDDPHRDDSTTDSKTTTSLDYESTPTSTQSTASTKSSTSEGITTS 563

Query: 402 DRCYPRATSRSSTRETI 452
           ++   R  S S T + I
Sbjct: 564 EQTSHRMFSASKTPDII 580


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 359 EGKEIVK-HYFPVQFRQVLSESNVKIINKRDNLAIKL 466
           E K IVK + +  + +QVL ES + + N+ D +A+KL
Sbjct: 417 ENKTIVKENVYLSESKQVLLESEINLKNELDEMAVKL 453


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 359 EGKEIVK-HYFPVQFRQVLSESNVKIINKRDNLAIKL 466
           E K IVK + +  + +QVL ES + + N+ D +A+KL
Sbjct: 417 ENKTIVKENVYLSESKQVLLESEINLKNELDEMAVKL 453


>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7c protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +2

Query: 218 ADYNTAVSLILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPVQ 397
           +DY TA +  LLL+  S  S+  D  NN   + N   +E   K+   + +   + +F  Q
Sbjct: 482 SDYETASTRQLLLKMGSRVSVKADEENN--NNNNEKSIENIQKI---DNRMWYQRFFEDQ 536

Query: 398 FRQVLSESNVKIIN 439
           +   +S S + I++
Sbjct: 537 YAPFISNSKISILS 550


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +2

Query: 218 ADYNTAVSLILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPVQ 397
           +DY TA +  LLL+  S  S+  D  NN   + N   +E   K+   + +   + +F  Q
Sbjct: 466 SDYETASTRQLLLKMGSRVSVKADEENN--NNNNEKSIENIQKI---DNRMWYQRFFEDQ 520

Query: 398 FRQVLSESNVKIIN 439
           +   +S S + I++
Sbjct: 521 YAPFISNSKISILS 534


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +2

Query: 218 ADYNTAVSLILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPVQ 397
           +DY TA +  LLL+  S  S+  D  NN   + N   +E   K+   + +   + +F  Q
Sbjct: 482 SDYETASTRQLLLKMGSRVSVKADEENN--NNNNEKSIENIQKI---DNRMWYQRFFEDQ 536

Query: 398 FRQVLSESNVKIIN 439
           +   +S S + I++
Sbjct: 537 YAPFISNSKISILS 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,692
Number of Sequences: 27780
Number of extensions: 308042
Number of successful extensions: 1033
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)