Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_N16
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 231 7e-62
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 62 8e-11
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 49 8e-07
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 47 4e-06
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 43 7e-05
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 42 1e-04
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 37 0.003
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 34 0.023
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 33 0.040
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 33 0.070
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 31 0.21
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 31 0.28
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.28
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.65
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.86
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 29 1.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 28 1.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.5
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 28 1.5
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 28 2.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 2.0
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 27 2.6
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 2.6
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.6
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.5
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 27 4.6
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 6.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 8.0
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 8.0
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 8.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 8.0
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 8.0
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 231 bits (566), Expect = 7e-62
Identities = 118/207 (57%), Positives = 150/207 (72%), Gaps = 1/207 (0%)
Frame = +2
Query: 185 KKMTKTRRRSMSLRXPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLL 361
KK K + PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LL
Sbjct: 21 KKDQKKDKPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLL 80
Query: 362 MEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYV 541
MEEE+++NQERLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YV
Sbjct: 81 MEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYV 139
Query: 542 SILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMXVSHEA*KGSTGNLC*HWWPGHP 721
SI+SFVDKD LEPGCSVLL+HK ++VG+L DDTDPM + K T +
Sbjct: 140 SIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQ 199
Query: 722 DPGNQGICGVASXHPEYYEEMGIKPPK 802
+ + HPE YEEMGIKPPK
Sbjct: 200 IQEIKEAVELPLTHPELYEEMGIKPPK 226
Score = 71.3 bits (167), Expect = 2e-13
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +3
Query: 648 PWXSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLVRXS- 824
P +VMKL+KAP E+YADIGGL++QIQEIKE+VELPL ++ + ++ +
Sbjct: 175 PMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAP 234
Query: 825 GHW*TLLAKAVANQT 869
G TLLAKAVANQT
Sbjct: 235 GTGKTLLAKAVANQT 249
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 62.5 bits (145), Expect = 8e-11
Identities = 35/104 (33%), Positives = 59/104 (56%)
Frame = +2
Query: 335 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 514
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 515 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 646
++ GS + V ILS +D++ L+P SV L +A+V +L + D
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 657 SVMKLEKAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLV-RXSGHW 833
S+++ ++ P +YAD+GGLD Q QE++E+VELPL + ++ + R L+ G
Sbjct: 121 SMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTG 180
Query: 834 *TLLAKAVANQT 869
T+L KAVAN T
Sbjct: 181 KTMLVKAVANST 192
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 49.2 bits (112), Expect = 8e-07
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 648 PWXSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLV-RXS 824
P S+M +EK P TY +GGL+ QI+EIKE +ELP+ + + L+
Sbjct: 129 PLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPP 188
Query: 825 GHW*TLLAKAVANQT 869
G TLLA+AVA+ T
Sbjct: 189 GTGKTLLARAVAHHT 203
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 46.8 bits (106), Expect = 4e-06
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 648 PWXSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRS-HLVRXS 824
P ++M++E+ P TY D+GG QI+ ++E VELPL K + + L
Sbjct: 163 PSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPP 222
Query: 825 GHW*TLLAKAVANQT 869
G TL A+AVAN+T
Sbjct: 223 GTGKTLCARAVANRT 237
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 663 MKLEKAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLV-RXSGHW*T 839
M++++ P E Y+DIGGL QI+E+ E++ LP+ + +K + L+ G T
Sbjct: 174 MEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKT 233
Query: 840 LLAKAVANQT 869
LLA+A A Q+
Sbjct: 234 LLARACAAQS 243
Score = 34.7 bits (76), Expect = 0.017
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 21/120 (17%)
Frame = +2
Query: 350 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 493
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 494 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 646
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 41.9 bits (94), Expect = 1e-04
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Frame = +2
Query: 335 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 502
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 503 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMXVSHEA*KGS 682
IV S G + V + VD+ L G V L+ ++ +L + DP+ +
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI--ED 125
Query: 683 TGNLC*HWWPGHPDPGNQ--GICGVASXHPEYYEEMGIKPPK 802
G++ G + + + + +PE + +GIKPPK
Sbjct: 126 PGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPK 167
Score = 34.7 bits (76), Expect = 0.017
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +3
Query: 663 MKLEKAPQETYADIGGLDTQIQEIKESVELPL 758
M +E ++A +GGL+ QI+E++E +ELPL
Sbjct: 121 MSIEDPGDISFAGVGGLNEQIRELREVIELPL 152
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 778 RNGNQTSXGVILYGPPGTGK 837
R G + GV+LYGPPGTGK
Sbjct: 160 RVGIKPPKGVLLYGPPGTGK 179
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 693 YADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLV-RXSGHW*TLLAKAVANQT 869
Y DIGG Q+ +I+E VELPL K R L+ G TL+A+AVAN+T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Score = 34.3 bits (75), Expect = 0.023
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 675 KAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHL-VRXSGHW*TLLAK 851
+ P + DIGGL+ +E++E+V++P+ ++ + L G TLLAK
Sbjct: 490 EVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAK 549
Query: 852 AVANQ 866
A+AN+
Sbjct: 550 AIANE 554
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 778 RNGNQTSXGVILYGPPGTGK 837
R G S GV+ +GPPGTGK
Sbjct: 525 RFGVTPSKGVLFFGPPGTGK 544
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 748 SCLXPSGIL*RNGNQTSXGVILYGPPGTGK 837
S L P G++ + G G++LYGPPGTGK
Sbjct: 288 SRLFPPGMVEKLGINHVKGILLYGPPGTGK 317
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.5 bits (73), Expect = 0.040
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 675 KAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLV-RXSGHW*TLLAK 851
++P ++DIGG + Q++KESVE PL T + + L+ G T+ AK
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAK 600
Query: 852 AVANQT 869
A+A +T
Sbjct: 601 AIATET 606
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 690 TYADIGGLDTQIQEIKESVELP 755
T++ IGGL QI +I++ VELP
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELP 298
Score = 30.3 bits (65), Expect = 0.37
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 802 GVILYGPPGTGK 837
GV+LYGPPGTGK
Sbjct: 315 GVLLYGPPGTGK 326
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 32.7 bits (71), Expect = 0.070
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 690 TYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLVR-XSGHW*TLLAKAVA 860
++ +GGLD I ++KE V LPL +++ R L G TL+A+A+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 781 NGNQTSXGVILYGPPGTGK 837
+G + G++LYGPPGTGK
Sbjct: 157 HGRKPWSGILLYGPPGTGK 175
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 657 SVMKLEKAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLVRXSGHW* 836
S + +EK P + DI GL+ + +KE+V LP+ + L G
Sbjct: 117 SAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGK 175
Query: 837 TLLAKAVANQ 866
+ LAKAVA +
Sbjct: 176 SYLAKAVATE 185
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 784 GNQTSXGVILYGPPGTGK 837
G + GV+LYGPPGTGK
Sbjct: 684 GLKPRSGVLLYGPPGTGK 701
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 681 PQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLVRXSGHW*TLLAKAVA 860
P+ + DIGGL+ ++++++LPL + L G TLLAKAVA
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA 709
Query: 861 NQ 866
+
Sbjct: 710 TE 711
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 317 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 496
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 302 PHTRCRLKLLKLERIKDYLLM 364
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 778 RNGNQTSXGVILYGPPGTGK 837
R G + GV+L GPPGTGK
Sbjct: 294 RLGGKLPRGVLLTGPPGTGK 313
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 696 ADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLVR-XSGHW*TLLAKAVANQ 866
+DIGGLD I E+ E V +P+ + + R L+ G T+LA A+AN+
Sbjct: 174 SDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANE 231
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 784 GNQTSXGVILYGPPGTGK 837
G GV+L+GPPG GK
Sbjct: 522 GISAPTGVLLWGPPGCGK 539
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 802 GVILYGPPGTGKHSWPRLL 858
GV+ +GPPGTGK R+L
Sbjct: 408 GVLFHGPPGTGKTLMARVL 426
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 660 VMKLEKAPQETYADIGGLDTQIQEIKESVELPLXIRNTMKKWES 791
+ +LEK ++ A + L T+I E+K + N MK++ S
Sbjct: 1290 IQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLNLMKEYNS 1333
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 682 HRKPMLTLVAWTPRSRKSRNLWSCLXPSGIL*RNGNQTS 798
H++P L P R W C P G L +N N S
Sbjct: 461 HKEPCKYLTVRKPGINYGRKFWICARPVGELIKNSNAVS 499
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 802 GVILYGPPGTGKHSW 846
G +LYGPPG+GK S+
Sbjct: 244 GYLLYGPPGSGKTSF 258
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 790 QTSXGVILYGPPGTGK 837
+ + G++L+GPPGTGK
Sbjct: 490 EPARGMLLFGPPGTGK 505
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 778 RNGNQTSXGVILYGPPGTGK 837
R G + G IL GPPGTGK
Sbjct: 323 RLGAKIPRGAILSGPPGTGK 342
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1
Query: 802 GVILYGPPGTGK 837
G++L+GPPGTGK
Sbjct: 414 GMLLFGPPGTGK 425
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 693 YADIGGLDTQIQEIKESVELPLXIRNTMKKWESNLXRSHLVRXSGHW*TLLAKAVANQ 866
++DI GLD +KE+V P + + L G T+LA+AVA +
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQGLREPVQGMLLFGPPGTGKTMLARAVATE 435
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 687 ETYADIGGLDTQIQEIKESVELPLXIRNTMKKWESNL 797
E A+ G QE+K E +R+ M++W SN+
Sbjct: 905 ELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNV 941
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 365 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 463
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 802 GVILYGPPGTGK 837
G++LYGPPG GK
Sbjct: 127 GLLLYGPPGCGK 138
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 643 GSHGCQS*SLKRLHRKPMLTLVAWTPRSRKS 735
G+ G ++ L RLH + L AWT SR S
Sbjct: 296 GARGKENRGLYRLHEFTKVELFAWTHPSRSS 326
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 386 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 562
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 563 KDQLEPGCS 589
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 232 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 408
Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208
Query: 409 RE 414
R+
Sbjct: 209 RK 210
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 332 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 502
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 503 AI 508
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 287 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 466
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 323 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 439
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 805 VILYGPPGTGKHS 843
++ YGPPGTGK S
Sbjct: 59 MLFYGPPGTGKTS 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,039
Number of Sequences: 5004
Number of extensions: 60936
Number of successful extensions: 249
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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