Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N15
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.2  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   2.1  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    27   3.6  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    27   4.8  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   6.3  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 603 RDHRDHKGPGIDKAHKARMDHTGKGIDTDRKAHMGRKARMDHK 475
           +D   HKGP   + HK   D        D++ H G K +  HK
Sbjct: 369 KDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHK 411



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = -1

Query: 603 RDHRDHKGPGIDKAHKARMDHTGKGIDTDRKAHMGRKARMDHKARMARTEDTVQGTDRTA 424
           +D   HKGP   + HK   D        D++ H G K +  H+    +  +  +   +++
Sbjct: 378 KDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSS 437

Query: 423 HK 418
           H+
Sbjct: 438 HE 439



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/68 (26%), Positives = 26/68 (38%)
 Frame = -1

Query: 609 DHRDHRDHKGPGIDKAHKARMDHTGKGIDTDRKAHMGRKARMDHKARMARTEDTVQGTDR 430
           +H     H+GP   + HK   D        D++ H G K +  HK    + E      D+
Sbjct: 349 EHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDK-EHHKGPKDK 407

Query: 429 TAHKDHMD 406
             HK   D
Sbjct: 408 EHHKGPKD 415


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 702 DKWLIHISLAGLDMGTGTGLGKXRM 628
           DKW I + LAG   G G GLG   M
Sbjct: 88  DKWDIMLQLAGTITGIGAGLGMPLM 112


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 287 RSDASVSETWRPGRGDQLVSWRNYAEKKDEKKEG 388
           RS        R   G Q V W N AE + E +EG
Sbjct: 643 RSSEGELAALRDAGGKQFVDWLNTAESESESEEG 676


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 300 DASLRAANNGAALFLVPAEVKARPLMHFKNDTFFVKTAFLRTKA 169
           D  L  A NGA + ++PA V  +P M  ++D F    + +R  A
Sbjct: 88  DKGLEKALNGADVVIIPAGVPRKPGM-TRDDLFATNASIVRDLA 130


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 525 DTDRKAHMGRKA-RMDHKARMARTEDTVQGTDRTAHKD 415
           DTD  + + RK  RMD KA  +  E +   T  +AH D
Sbjct: 186 DTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHND 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,130
Number of Sequences: 5004
Number of extensions: 47537
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)