Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_N15
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0535 + 20117205-20117401,20118556-20118628,20118725-201187... 30 2.9
09_06_0175 + 21350528-21351136 29 5.0
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 29 6.7
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 29 6.7
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348... 29 6.7
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649... 28 8.8
03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092 28 8.8
03_02_0474 - 8759585-8759626,8759753-8759893,8760001-8760093,876... 28 8.8
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 28 8.8
>12_02_0535 +
20117205-20117401,20118556-20118628,20118725-20118787,
20119167-20119220,20119303-20119359,20119615-20119707
Length = 178
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = -1
Query: 666 DMGTGTGLGKXRMVRKVRTDHRDHRDHKGPGIDKAHKARMDH-TGKGIDTDR--KAHMGR 496
D + +G + R + R+ HR A KAR D + D++ K+ +
Sbjct: 24 DSSSSSGSDRRRRRARHRSGHRKDAAAAASSSSSALKARKDRSSSSSYDSEHEGKSRKHK 83
Query: 495 KARMDHKAR-MARTEDTVQGTDRTAHKD 415
K+R K+R R++D D++ HK+
Sbjct: 84 KSRSSRKSRERERSKDRHSKRDKSKHKE 111
>09_06_0175 + 21350528-21351136
Length = 202
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 351 RHETSWSPRPGRQVSETDASLRAANNGAALFLVPAEVKAR 232
RH S RPGR T+ RAA + + L+P V AR
Sbjct: 7 RHGCRRSRRPGRNALPTNRPARAAEAPSVVVLLPGGVGAR 46
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 545 SMRALWALSIPGPLWSLWSLWSVRTLRTMRXLPKPVPVPMSKP 673
S++ W S G SLW + L T P P P+ + +P
Sbjct: 341 SVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRP 383
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 15 TDYXLIGNPXKILTSFTTPS*HGHEFLVKLTKNN 116
TD + G+P +++ S +P+ H+ ++LT+NN
Sbjct: 160 TDLPVWGDPRELMNSLCSPAELPHKLQIELTENN 193
>02_01_0485 +
3487578-3487635,3488281-3488399,3488600-3488698,
3488795-3488851,3488954-3489109,3489227-3489311,
3489489-3489579,3489693-3489857,3489923-3490045,
3490244-3490319,3490486-3490633,3490769-3491934,
3492041-3492231,3492321-3492513
Length = 908
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 545 SMRALWALSIPGPLWSLWSLWSVRTLRTMRXLPKPVPVPMSKP 673
S++ W S G SLW + L T P P P+ + +P
Sbjct: 341 SVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRP 383
>04_04_0750 +
27763841-27763972,27764311-27764485,27764908-27764998,
27764999-27765133,27765683-27765742,27765876-27765951,
27766037-27766174,27766509-27767373,27767763-27767865,
27768101-27768176,27768329-27768393,27768463-27768493,
27768618-27768725
Length = 684
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 638 LPKPVPVPMSKPAKEM*ISHLSGMQLSRSYEA*GTEERGKNCLASAPRGLS 790
LPKP+PVP +P K+ G L Y G GK +++AP LS
Sbjct: 541 LPKPLPVPDFEPKKKR-----GGDGLGEGYGMLGQAGSGKLRVSTAPSKLS 586
>03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092
Length = 97
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 536 PVWSMRALWALSIPGPLWSLWSLWSVR 616
P WS R+ +A + PL +W LW R
Sbjct: 15 PSWSSRSGFAQKVSAPLEDVWWLWRPR 41
>03_02_0474 -
8759585-8759626,8759753-8759893,8760001-8760093,
8760194-8760352
Length = 144
Score = 28.3 bits (60), Expect = 8.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 771 QRHGGCQGDPVTDXLVPPSKXIKPDRXAP 857
+RH C+G+P T+ +P + + P P
Sbjct: 111 ERHASCKGNPATNEWIPSADTVYPASDKP 139
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 118 QNFQVTNRRVNKINVNNGFSSEEGCLDEKCVVLKMHQGASFDFRGHQ 258
QN + + + + N+ + + + + ++ K+H GA FD RGHQ
Sbjct: 175 QNGTILKKTLRRGNLEGQHTENQAVVGVR-LIGKLHDGAVFDQRGHQ 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,638
Number of Sequences: 37544
Number of extensions: 392314
Number of successful extensions: 1439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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