Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_N11
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 73 2e-13
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 65 8e-11
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 63 2e-10
07_01_1001 - 8460467-8460799 45 9e-05
07_03_0321 + 16757414-16757743 43 4e-04
01_06_0098 - 26416768-26416998 31 0.93
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 4.9
07_01_0019 + 124594-126477 29 4.9
12_01_0140 - 1088400-1088843 29 6.5
07_03_1259 + 25255775-25255780,25255880-25255967,25256142-252567... 29 6.5
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/57 (54%), Positives = 47/57 (82%)
Frame = +3
Query: 135 GKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 305
G T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P GGG
Sbjct: 14 GNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 64.9 bits (151), Expect = 8e-11
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = +3
Query: 132 SGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 305
+G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GREK +S+P GGG
Sbjct: 13 AGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +3
Query: 132 SGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 305
+G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GREK +S+P GGG
Sbjct: 206 AGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGGG 263
>07_01_1001 - 8460467-8460799
Length = 110
Score = 44.8 bits (101), Expect = 9e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +3
Query: 135 GKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 299
G +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+ VG
Sbjct: 14 GNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 42.7 bits (96), Expect = 4e-04
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +3
Query: 135 GKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 284
G +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L+
Sbjct: 14 GNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.93
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 147 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 245
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 138 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 263
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
>07_01_0019 + 124594-126477
Length = 627
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = -3
Query: 283 DSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPLQHSQVNTRP 104
+SFS ++ S L +V +S A I E R GVV L S+V RP
Sbjct: 525 ESFSEMGTMAAS-GRQLMAVAVKMSLEEMARIEEEQRFIQREMEKGVVFILGESEVVARP 583
Query: 103 RNAFFK 86
++ K
Sbjct: 584 HSSLLK 589
>12_01_0140 - 1088400-1088843
Length = 147
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 138 KTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 263
KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 25 KTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>07_03_1259 +
25255775-25255780,25255880-25255967,25256142-25256728,
25257172-25257362,25257531-25257594,25257949-25257984
Length = 323
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -3
Query: 208 FSPSASIPTELRIFSTSAAAGVVLPLQHSQVNTRPRNAFFKSST*HETCNAERIKILRDS 29
FSPS + P L+ S + + H ++N RP NA SS + + R K+ R+
Sbjct: 207 FSPSPAPPPTLKDPVESRIEKLFRTMLHKRMNARPSNAAASSSRKYYLEDKPREKMQREH 266
Query: 28 L 26
L
Sbjct: 267 L 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,429,675
Number of Sequences: 37544
Number of extensions: 288842
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -