Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N10
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    51   1e-06
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   8.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   8.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   8.2  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 41/79 (51%)
 Frame = +2

Query: 278 GXQRGLPXXXGNPAPLKVXGA*DRAXXPXXAGKHSVYVYRAXXRTPXPGXPRGXKTKLRA 457
           G +RGL     + + LK+ G  ++      AGK  VY+Y+A  +T   G      T+ RA
Sbjct: 26  GFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHT--VATRTRA 83

Query: 458 IWGXVTRPXGXAGRCPSXF 514
           IWG +TRP G AG   + F
Sbjct: 84  IWGKITRPHGNAGAVRAKF 102


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +2

Query: 719 MRSXXXPQXGXXGXNXPXXAXPPGXXXAXXXXPPXXGGRXPPXXRQXXXLPXXSPP 886
           M S   P  G  G   P    PP         PP   G  PP        P   PP
Sbjct: 145 MPSGMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPP 200


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +2

Query: 719 MRSXXXPQXGXXGXNXPXXAXPPGXXXAXXXXPPXXGGRXPPXXRQXXXLPXXSPP 886
           M S   P  G  G   P    PP         PP   G  PP        P   PP
Sbjct: 145 MPSGMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPP 200


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = -3

Query: 832 PPXXRGXXXXCXXXPGGGGXXXXIXPPXPXLWXXPGPHXGXXXXXGSXGPXPXRGEGA 659
           PP            P G G      PP P     PG +       G  GP P  G GA
Sbjct: 386 PPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGA 443


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +2

Query: 722 RSXXXPQXGXXGXNXPXXAXPPGXXXAXXXXPPXXGGRXPPXXRQXXXLPXXSPP 886
           R+   P       + P  + PP    A    PP   G  PP  RQ    P  SPP
Sbjct: 293 RAGSPPPPPPPRGSPPTGSLPP--PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +2

Query: 722 RSXXXPQXGXXGXNXPXXAXPPGXXXAXXXXPPXXGGRXPPXXRQXXXLPXXSPP 886
           R+   P       + P  + PP    A    PP   G  PP  RQ    P  SPP
Sbjct: 314 RAGSPPPPPPPRGSPPTGSLPP--PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +2

Query: 722 RSXXXPQXGXXGXNXPXXAXPPGXXXAXXXXPPXXGGRXPPXXRQXXXLPXXSPP 886
           R+   P       + P  + PP    A    PP   G  PP  RQ    P  SPP
Sbjct: 299 RAGSPPPPPPPRGSPPTGSLPP--PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,012
Number of Sequences: 27780
Number of extensions: 222375
Number of successful extensions: 418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)