Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N08
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    26   0.54 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    26   0.54 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.54 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.94 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.6  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 71  TRTKHADCVFKVVARNRFDKNSGISFNSFTR 163
           T T  ADC   +VA    +  +GIS N  TR
Sbjct: 31  TGTSQADCAVLIVAAGTGEFEAGISKNGQTR 61


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 71  TRTKHADCVFKVVARNRFDKNSGISFNSFTR 163
           T T  ADC   +VA    +  +GIS N  TR
Sbjct: 47  TGTSQADCAVLIVAAGTGEFEAGISKNGQTR 77


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 71  TRTKHADCVFKVVARNRFDKNSGISFNSFTR 163
           T T  ADC   +VA    +  +GIS N  TR
Sbjct: 104 TGTSQADCAVLIVAAGTGEFEAGISKNGQTR 134


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 71  TRTKHADCVFKVVARNRFDKNSGISFNSFTR 163
           T T  ADC   +VA    +  +GIS N  TR
Sbjct: 104 TGTSQADCAVLIVAAGIGEFEAGISKNGQTR 134


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 364 DRNEFLHINTTVPDLIRLHEN 426
           ++  + HI TT  + IR+H +
Sbjct: 103 EKQSYFHIATTSNEFIRIHHS 123


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 364 DRNEFLHINTTVPDLIRLHEN 426
           ++  + HI TT  + IR+H +
Sbjct: 103 EKQSYFHIATTSNEFIRIHHS 123


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 364 DRNEFLHINTTVPDLIRLHEN 426
           ++  + HI TT  + IR+H +
Sbjct: 42  EKQSYFHIATTSNEFIRIHHS 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,821
Number of Sequences: 438
Number of extensions: 3092
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)