Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_N07
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0137 + 15624078-15624101,15624259-15624312,15624900-156249... 46 4e-05
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 38 0.011
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 34 0.13
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 32 0.70
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 32 0.70
04_03_0841 - 20230920-20230994,20231084-20231164,20231410-202315... 31 1.6
04_04_0667 + 27097741-27098085,27098203-27098547 30 2.8
>02_03_0137 +
15624078-15624101,15624259-15624312,15624900-15624954,
15625192-15625296,15625682-15625722,15626057-15626162,
15627010-15627016,15627134-15627218,15627315-15627428
Length = 196
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 279 LTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTL 458
LT E+ LP T TY+++ ++F+ + QK N S I + K L L
Sbjct: 110 LTLEELRQLPDNTNTYKTVGKVFILEPKSLLLNEQEQKLNDSESAIASMQTSKEYLEKQL 169
Query: 459 NESESNIRDLIQQ 497
E E+NIR+L+QQ
Sbjct: 170 AEVENNIRELLQQ 182
>10_08_0838 -
20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 336 ARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESES 473
A M +Q+DL+ +K L +K N R+ DLN +K L H ++ES+S
Sbjct: 185 ATMVLQNDLDWLKYQLNEKAN----RLQDLNQQKHLLEHRISESDS 226
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 348 VQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNE--SESNIRDLIQQ 497
+++DLEH K+N RQ I +D+L K+ N+ L E +E R+L ++
Sbjct: 261 MKADLEHEKKNRRQLEKINIKLVDELKEVKMAANNLLQEYDNERKTRELTEE 312
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 31.9 bits (69), Expect = 0.70
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Frame = +3
Query: 126 LXTXIKMAKTVDLALKQAFVXLQVLMIETKKXIENIDHQLAVLGRMQMHTNLTQREIDVL 305
L I+MA LKQ V L+ + E KK +EN+ Q + L +E+
Sbjct: 364 LTKEIQMANEKLNELKQTKVNLENAVSELKKEVENLTEQ-------NRSSELLIQELRDE 416
Query: 306 PPGTKTYESMARMFVQSDLEHIKQNLRQKTNTL------ISRIDDLNNRKVCLNHTLNES 467
K ++ + +QS I Q +K TL + R+ DL ++ + L L E
Sbjct: 417 INSLKDSKNELQNEIQSLRSTISQLNTEKDATLFQHQQSVERVSDLESQLLKLQPELEEI 476
Query: 468 ESNIRDLIQQKRMKNENQPAAES 536
E ++ L+Q K + +A +
Sbjct: 477 EQKVQMLMQDLEQKRQEADSAHA 499
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 31.9 bits (69), Expect = 0.70
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +3
Query: 198 LMIETKKXIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQ 377
L ++ K I+NIDHQ R++ + L +RE L + + M ++ ++
Sbjct: 565 LALKEKSLIDNIDHQ-----RLE-NEELLKRERADLQRNLQLHRHELEMEMEKKQASKER 618
Query: 378 NLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD-LIQQKRMKNENQPAAE 533
L +K N L ++D + N L +ES I+ L+++K+++ E + E
Sbjct: 619 ELEEKENELNRKMDFVENE---LKRAAELNESKIQKILLEKKQLQKEKEVLVE 668
>04_03_0841 -
20230920-20230994,20231084-20231164,20231410-20231520,
20232050-20232268
Length = 161
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +3
Query: 327 ESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRM 506
ES F++ +LE + R++ + RID +N + L T + E +++++
Sbjct: 64 ESKRLAFIRQELEGMADPTRKEVEVIRKRIDVVNRQLKPLGKTCVKKEKEYKEILEAYNE 123
Query: 507 KNENQ 521
KN+ +
Sbjct: 124 KNKEK 128
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 360 LEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRD 485
LEH LR K + L SR++ L K+ L L+E +R+
Sbjct: 84 LEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLRE 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,063
Number of Sequences: 37544
Number of extensions: 255915
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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