Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_N04
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 35 0.017
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.16
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 2.6
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 27 4.5
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 27 4.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 4.5
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 26 5.9
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 26 5.9
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 26 5.9
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 26 5.9
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 475 ARKVIPVEGDISELGVGLNDEDRMKLAQEVNVIFHVAATTRFEEPLKKATFINVRGTREI 654
+ +I + E+ GL+D L + V+ I+H+AA + + ++ NV GT+ +
Sbjct: 698 SENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMKSYQELRPANVLGTKTV 757
Query: 655 LELA 666
LEL+
Sbjct: 758 LELS 761
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.5 bits (68), Expect = 0.16
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 177 NGQRFGFGDRAGLASEGPRGGSASGRVGCAAVLRGNHSADHWRDG 311
NG R GFG G A G RGG+ GR G G + R G
Sbjct: 22 NGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.6
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -1
Query: 719 LENAVDTCTKDLRSLQHLASSKISLVPLTLMNVAFFRGS-SNLVVAATWNITFTSCASFI 543
L+NA+ T T L L H S KI PLT + + + S L+ A+ T + AS +
Sbjct: 152 LKNAISTTTLVLSDLNHFRSKKI---PLTEFALRYPESAVSKLLDQASIERTLRAQASAM 208
Query: 542 LSSSFRPTPSS 510
+ RP S+
Sbjct: 209 IVKFSRPEDSA 219
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 277 RRTAAQPTRPEALPPLGPSDARPARSPKPKRCP 179
R+ A T+P P+ + ARP + P+R P
Sbjct: 30 RQARAGQTKPATTRPMAEARARPGATAVPRRSP 62
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 180 GQRFG--FGDRAGLASEGPRGG-SASGRVG-CAAVLRGNHSADHWRD 308
G FG F DR G A++GPR A R +A ++ HS +WRD
Sbjct: 175 GAIFGQEFSDRHGFAAQGPRRKLMARARNWLLSAAIQPYHSWVYWRD 221
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 4.5
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 334 EKLLRSCDVKRIYILMRSKKGKSMPERLQS---QFNEPVYDNLRSQQPDFARKVIPVEGD 504
E LLR + + + S + K + ++ S Q NE S+ P+ RK+ + +
Sbjct: 1206 ESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNE--LSPKASKVPELERKITNLMHE 1263
Query: 505 ISELGVGLNDEDRMKL 552
S+LG DE R L
Sbjct: 1264 YSQLGKTFEDEKRKAL 1279
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 367 IYILMRS-KKGKSMPERLQSQFNEPVYDN 450
IY+ + + KK KS+P RL+ QF EPV N
Sbjct: 186 IYLNINNLKKSKSVP-RLRGQFMEPVEHN 213
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 40 DFGQMHRKCFSFANCTTINNLPWPLLPPSQQELIIILRFGLVKPFRMDSALALEIEQ 210
+F + H C+ +T + L WPLL I++ F + K F + L++ I +
Sbjct: 56 EFSKFHDSCYPDGRISTRSKLRWPLL----IIWCILIVFAIDKNFEVKDFLSIWINE 108
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 40 DFGQMHRKCFSFANCTTINNLPWPLLPPSQQELIIILRFGLVKPFRMDSALALEIEQ 210
+F + H C+ +T + L WPLL I++ F + K F + L++ I +
Sbjct: 76 EFSKFHDSCYPDGRISTRSKLRWPLL----IIWCILIVFAIDKNFEVKDFLSIWINE 128
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 40 DFGQMHRKCFSFANCTTINNLPWPLLPPSQQELIIILRFGLVKPFRMDSALALEIEQ 210
+F + H C+ +T + L WPLL I++ F + K F + L++ I +
Sbjct: 56 EFSKFHDSCYPDGRISTRSKLRWPLL----IIWCILIVFAIDKNFEVKDFLSIWINE 108
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 40 DFGQMHRKCFSFANCTTINNLPWPLLPPSQQELIIILRFGLVKPFRMDSALALEIEQ 210
+F + H C+ +T + L WPLL I++ F + K F + L++ I +
Sbjct: 56 EFSKFHDSCYPDGRISTRSKLRWPLL----IIWCILIVFAIDKNFEVKDFLSIWINE 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,620
Number of Sequences: 5004
Number of extensions: 62699
Number of successful extensions: 234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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