Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N03
         (927 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836           29   5.2  
12_02_1238 - 27246769-27246948,27247030-27247104,27247848-272479...    28   9.2  

>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
          Length = 526

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 17  VYDL*GIP*DLNLLR*AGPGSPADSNSSNG 106
           ++DL G   D++LL  A PG+ + SNS NG
Sbjct: 152 IFDLGGGTLDVSLLNIARPGNNSSSNSDNG 181


>12_02_1238 -
           27246769-27246948,27247030-27247104,27247848-27247959,
           27248213-27248295,27248544-27248791,27249448-27249533,
           27250131-27250210,27250310-27250480,27250998-27251099,
           27251591-27251743,27252459-27252575,27252715-27252804,
           27253057-27253196,27253339-27253396,27253931-27254010,
           27254215-27254349,27254482-27254646,27254982-27255021
          Length = 704

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 222 QNIPPRQTCWLFIECRTGRSQVTQSPLAXGSFGPGST 112
           +++PPR  C   +  RTGR+++ +  L+ G+   G +
Sbjct: 143 KHVPPRVNCSFCVLFRTGRTEIVKLLLSRGAHVDGKS 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,749,534
Number of Sequences: 37544
Number of extensions: 281467
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)