Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_N01
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    29   4.6  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL117205-2|CAB55164.1|  169|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 307 LIGFHVCVAVLAGLDVEVLGDFVVLS-FIVDLVN 209
           L+ F V VA + GLD+E  GDFV+ S   +DL++
Sbjct: 7   LVFFTVGVAAIYGLDLENAGDFVLPSGDFIDLIS 40


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -1

Query: 834 GVPPXXXXXGSGKXVIIXHXGPTFFRXSKQFXXSLXGV-SXGNWNSWRTLPXC 679
           G PP      +   V++     +F+R  K F      V   GNWNSW     C
Sbjct: 453 GTPPTRIRSATTDMVVLFR---SFYRGGKGFEARARAVPEAGNWNSWSPWTAC 502


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 286 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQNLLLLFDERSVNRCC 146
           + +  GL  +      +LS+IV L+    + +   Q LLLLF  ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 286 VAVLAGLDVEVLGDFVVLSFIVDLV----NVVEKRQNLLLLFDERSVNRCC 146
           + +  GL  +      +LS+IV L+    + +   Q LLLLF  ++V RCC
Sbjct: 248 IIIACGLSFKSESTDEILSWIVILIPFASDALTLTQPLLLLFFSKTVRRCC 298


>AL117205-2|CAB55164.1|  169|Caenorhabditis elegans Hypothetical
           protein Y116A8A.2 protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 110 PSLSXSTVPEFKTTPVDAAFVEKQKKIL 193
           P +  +T+PE+++ P  A   E  KKI+
Sbjct: 34  PPIKRNTIPEYQSVPPGAVITEPAKKII 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,296
Number of Sequences: 27780
Number of extensions: 297978
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)