Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_M24
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         29   6.5  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.6  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 25/104 (24%), Positives = 29/104 (27%), Gaps = 1/104 (0%)
 Frame = +3

Query: 552  PXPPGKXGLXFXPXXLSXPXXPXPPVXRXGXXXSLPPXGVXRFPXKXGDTPXKXFXTXGP 731
            P PP   G    P   S P    PP+          P      P K      K      P
Sbjct: 727  PPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTPSPPKSSPPEEKSPPPHSP 786

Query: 732  PKRPXNLKXAXLXGFSQKXPP-PXXTXKXXPPFKGXXPKXXNTG 860
             K P +         S+K PP P        P K   P   + G
Sbjct: 787  EKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEG 830


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
 Frame = +2

Query: 545 KXXPPPXXXGFXFXPPXPFXPXKXPAPXXSX--GGXXFXXPXGGXTVSPKXGGYP 703
           K  PPP        PP P  P   P P      GG     P GG +  P   G P
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,397,523
Number of Sequences: 37544
Number of extensions: 171451
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)