Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_M21
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0112 + 5385660-5385821,5386337-5386876 31 1.6
02_05_0912 - 32689665-32690007,32690117-32690275,32690380-326905... 30 2.1
01_06_0824 - 32243495-32244319,32244449-32244859 30 2.1
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 30 2.8
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 30 2.8
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 4.8
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 6.4
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 29 6.4
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = +2
Query: 23 HYSGILKILMLLSLDIRETQATNMKTIICLFTIAIAAMAAVTNLSNVLKNGNDNF--TAR 196
+Y G++ M+ Q + +CL T+ + + ++ +S++LK G +NF +
Sbjct: 18 YYGGVILFYMIYGAQYSLFQCNGV--CMCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPK 75
Query: 197 MFTEVVKNNPGKSIVLSAFSVLPPLAQLALASDGETHEELLK 322
+ + VV+ P K + +F L +L +T + K
Sbjct: 76 VDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKNKTLGAIFK 117
>02_05_0912 -
32689665-32690007,32690117-32690275,32690380-32690573,
32690669-32690861,32690956-32692169
Length = 700
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 599 GLTKSLMRLXVFSSTQSLIDLAATVFFEKSIFWTSELKTSXGND 468
GLTK +RL + S++ A + F +WT E KTS G D
Sbjct: 494 GLTKETLRLDMISNSFPRYKDADIIIFNTGHWWTHE-KTSLGKD 536
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 593 LIRDSLSSATAAVLXQRHLFPGEHGSSKFDERLXSDRDFYV 715
L +D++ AT AVL F G+ SKFD R SD FY+
Sbjct: 161 LPKDAVDRATPAVLGNALYFKGDW-ESKFDARSTSDDVFYL 200
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 481 DVFNSDVQNIDF-SKNTVAAKSINDWVEENTXNRIKDLVNPGLAQLSHSGCSRSTPSISR 657
D + ++ + + F K A + IN+W E T RIKD L R+TP++
Sbjct: 123 DKYRAEARPVSFRDKLEEARREINEWFESATAGRIKDF-------LPKDAVDRATPAVLG 175
Query: 658 GAWEF 672
A F
Sbjct: 176 NALYF 180
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -1
Query: 202 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDCLHVCGLR--LSNVKTQQHQN 44
K GC+ + + + GCHC DG + + +DC L K QQH+N
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDCKKRTLLTNLFRGKKNQQHEN 442
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -1
Query: 202 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDCLHVCGLR--LSNVKTQQHQN 44
K GC+ + + + GCHC DG + + +DC L K QQH+N
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDCKKRTLLTNLFRGKKNQQHEN 443
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +3
Query: 342 DDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 464
++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 595 EESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 357 TEFASKSRDLRSIKGVELKMANKVYVHDG 443
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 552 IVNRLSCDCILREINILDVRIEDVXWKRLQNSRLVFH 442
+V L+ D ILREIN+ V++E + W +N + H
Sbjct: 546 LVKLLTADRILREINL--VKLESLLWHNDENINKITH 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,787
Number of Sequences: 37544
Number of extensions: 343241
Number of successful extensions: 878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -