Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_M08
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set (trithorax/...    30   2.5  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    30   2.5  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    30   2.5  
Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           b protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = +2

Query: 329 TVLMTPQEERESARGVEIADAFEDDMFGPPRTEPAARPKLSMISARLRANEERKRVIEIC 508
           T   T Q++++  + V   D +E   + PP T+  A P     + + R+ EE+K++I  C
Sbjct: 386 TAPKTVQKKQKPRKQVFEKDPYE--YYEPPPTKRPAPPPRFKKTFKPRSEEEKKKIIGDC 443

Query: 509 SQKLENIED 535
            + L ++ED
Sbjct: 444 -EDLPDLED 451


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 2, isoform
            c protein.
          Length = 1510

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = +2

Query: 329  TVLMTPQEERESARGVEIADAFEDDMFGPPRTEPAARPKLSMISARLRANEERKRVIEIC 508
            T   T Q++++  + V   D +E   + PP T+  A P     + + R+ EE+K++I  C
Sbjct: 1157 TAPKTVQKKQKPRKQVFEKDPYE--YYEPPPTKRPAPPPRFKKTFKPRSEEEKKKIIGDC 1214

Query: 509  SQKLENIED 535
             + L ++ED
Sbjct: 1215 -EDLPDLED 1222


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 2, isoform
            a protein.
          Length = 1507

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = +2

Query: 329  TVLMTPQEERESARGVEIADAFEDDMFGPPRTEPAARPKLSMISARLRANEERKRVIEIC 508
            T   T Q++++  + V   D +E   + PP T+  A P     + + R+ EE+K++I  C
Sbjct: 1154 TAPKTVQKKQKPRKQVFEKDPYE--YYEPPPTKRPAPPPRFKKTFKPRSEEEKKKIIGDC 1211

Query: 509  SQKLENIED 535
             + L ++ED
Sbjct: 1212 -EDLPDLED 1219


>Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical
           protein R90.1 protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 510 EQISMTRLRSSFARSRAEIMDNLGRAA--GSVRGGPNMSSSKASAISTPRALSRSS 349
           +Q  M++ + SF  S  E+MD  G A   G  R  P     KAS +STPR++  ++
Sbjct: 497 QQTLMSKWQGSFDASCEEMMDG-GDAEDRGHGRLNPAFPVPKASLLSTPRSMDSNT 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,378
Number of Sequences: 27780
Number of extensions: 284730
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)