Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_M07
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    41   3e-04
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    34   0.030
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    31   0.28 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    29   0.65 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   1.5  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    26   6.1  

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +2

Query: 290 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 469
           M I VK L G E  +DI P+  +S +K  V  K  IP  QQ+         DD   + Y 
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY- 59

Query: 470 NIKEGTKLNLVV 505
           +++ G+ L+LV+
Sbjct: 60  HLEGGSVLHLVL 71


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +2

Query: 227 VLKTPGSFVTQYFKTVKIISKMKITVKQLQGGECLIDIYPSMLISELKRHV 379
           +L+ PGS+V +  KT+    K K+ VK    G+ ++DI P + I E+K ++
Sbjct: 61  LLQEPGSYVGEVIKTM---GKNKVLVKVHPEGKYVVDISPDIDIKEIKPNI 108


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +2

Query: 458 QMYPNIKEGTKLNLVVKKPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSW 637
           ++Y  + E  K + +     +LY+ S+KH     M      N  +  L IV  +F  MS 
Sbjct: 14  RIYKTLSEALKTDKI-----TLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSR 68

Query: 638 DEVDRLCYDCLLDE 679
               RL Y  L DE
Sbjct: 69  VARHRLVYGLLKDE 82


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 632 SWDEVDRLCYDCLLDERXIRRPAYIENDIEIDDMFN 739
           S++E++R      L    IR P   END+++D++FN
Sbjct: 253 SFEEIERARQRFALLGDNIREPQEEENDVDVDEIFN 288


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 685 TSFVQQAVIAKSVNFIPGHFIKLLLNNPQ 599
           T+ +      + V F PGHFI+ +L++PQ
Sbjct: 304 TNILNHMTRLRIVPFAPGHFIEYILSHPQ 332


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 287 KMKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVE 406
           K+K+ V+ +QG  CL       + S+  R + RK    +E
Sbjct: 83  KVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIE 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,635
Number of Sequences: 5004
Number of extensions: 56560
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)