Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_M07
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical pr...    38   0.012
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   3.3  
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    29   4.3  
U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor prot...    28   7.6  
U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precurso...    28   7.6  

>Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical
           protein F45H11.2 protein.
          Length = 77

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = +2

Query: 290 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 469
           M I VK L G E  +DI P+  +  +K  V  K  IP  QQ+         DD T   Y 
Sbjct: 1   MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADY- 59

Query: 470 NIKEGTKLNLVV 505
            +  G+ L+LV+
Sbjct: 60  KVLGGSVLHLVL 71


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 491 LNLVVKKPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFD 625
           L ++VK  + + +   K Y+    S+ + ANT  K+ R+V+E FD
Sbjct: 340 LRMMVKLSDRMENPHLKEYRLPSFSETELANTRLKIGRVVKE-FD 383


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 572 DAANTANKLLRIVQEKFDKMSWDEVD 649
           + A+  N+ +RIVQ+KF++M+ D+ D
Sbjct: 58  EVASVKNQAMRIVQQKFEEMNRDKKD 83


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
            protein C56C10.12 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -3

Query: 694  SPYTSFVQQAVIAKSVNFIPGHFIKLL-------LNNPQKFVCSICSILV 566
            SP+ S+V   V  KS N   GHF + L       L+N  K   S CSI V
Sbjct: 1118 SPFASYVMLRVEQKSFNTFYGHFFETLTKKDKYTLDNAVKKASSKCSITV 1167


>U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor protein
           10 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 297 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 130
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


>U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precursor
           protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 297 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 130
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,117,972
Number of Sequences: 27780
Number of extensions: 316703
Number of successful extensions: 751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)