Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_M06
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 73 5e-14
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 47 4e-06
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 35 0.013
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 33 0.039
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 27 2.6
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 4.5
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 72.9 bits (171), Expect = 5e-14
Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 21/207 (10%)
Frame = +1
Query: 160 LTGKVIILTGTNR-VSYETALDLAKRGARVILTSSDKDKGAKLLRKIIRKSKNQNVSFEY 336
LTGKV ++TG++ + Y TAL+LA++GA+V L +++K K++++I + ++ + F
Sbjct: 40 LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLR 99
Query: 337 TNFNSLTSVRKFVEGFRNTQLKLDVLVLN----NEVNASDKDVGISPHVSNYYGQFLLTN 504
+ SV + E F + KL +LV N N KD +NY +L T
Sbjct: 100 LDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTE 159
Query: 505 LLVPTLKKSA----PSRV----IVTTSCLQK------FGKIN--NLNAKGFQSYSNSKLC 636
LL+PTL+++A P V + + + LQ F +N ++ F Y SK
Sbjct: 160 LLLPTLRRTAEECRPGDVRIVHVASIAYLQAPYSGIYFPDLNLPHVLLGTFARYGQSKYA 219
Query: 637 YGLFSSELSQRLDSYGVSVRSAAIGIL 717
L+S L++RL+ YG+ S G++
Sbjct: 220 QILYSIALAKRLEKYGIYSVSLHPGVI 246
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 46.8 bits (106), Expect = 4e-06
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 6/176 (3%)
Frame = +1
Query: 163 TGKVIILTGTNR-VSYETALDLAKRGARVILTSSDKDKGAKLLRKIIRKSKN-QNVSFEY 336
T KV + G NR + +L+ R + S+ K + A L++ + N + V +
Sbjct: 4 TNKVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATELQEWSKSHPNVKTVELDV 63
Query: 337 TNFNSLT----SVRKFVEGFRNTQLKLDVLVLNNEVNASDKDVGISPHVSNYYGQFLLTN 504
T+ S SV K V+G L + V + ++V + + +N G +
Sbjct: 64 TSQQSANEAAQSVAKAVDGIDVLWLNSGICQSYYTVMEAPEEVWNAHYQTNVLGPIHVFK 123
Query: 505 LLVPTLKKSAPSRVIVTTSCLQKFGKINNLNAKGFQSYSNSKLCYGLFSSELSQRL 672
P L K +VI T+S + G + + A GF +Y SK ELS L
Sbjct: 124 AFYPLLTKKKTRQVIFTSS---ECGSMGDFRATGFSAYGQSKAAINFTMKELSVEL 176
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 35.1 bits (77), Expect = 0.013
Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Frame = +1
Query: 160 LTGKVIILTG-TNRVSYETALDLAKRGARV-ILTSSDKDK-GAKLLRKIIRKSKNQNVSF 330
+ G V+++TG ++ + LA GA+V IL ++ D+ + + +++KNQ +
Sbjct: 73 MNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLRTEPDQFTVDYIMDLRKRTKNQLIYT 132
Query: 331 EYTNFNSLTSVRKFVEGFRN-TQL-KLDVLVLNNEV------NASDKDVGIS-PHVSNYY 483
E + +S+ SVRKF + + T + +LD++VL + V + + G+ +N+
Sbjct: 133 EVCDLSSMLSVRKFATKWIDCTPIRRLDMIVLCSGVLLPPFMDRQTTEEGVELQWATNFL 192
Query: 484 GQFLLTNLLVPTL 522
G + L +L P +
Sbjct: 193 GPYQLLRILRPVI 205
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 33.5 bits (73), Expect = 0.039
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = +1
Query: 157 ILTGKVIILTGTNRVSYETALDLAKRGARVILTSSDKDKGAKLLRKIIRKSKNQNVSFEY 336
++ GKV ++ G V + L +GARVI+T D + + + E
Sbjct: 211 MIAGKVAVVAGFGDVGKGCSTSLRSQGARVIVTEVDPINALQAAMDGFEVTTMEEAVKEG 270
Query: 337 TNFNSLTSVRKFVEGFRNTQLKLDVLVLN 423
F + T R + G ++K D +V N
Sbjct: 271 QIFVTTTGCRDIIRGEHFNEMKEDSIVCN 299
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +1
Query: 589 NLNAKGFQSYSNSKLCYGLFSSELSQRLDSYGVSVRSAAIGILYEIFKGTIFEKIFSMYT 768
N+ + ++ N K GL S + + L S V A+ + + F+ ++ + SMYT
Sbjct: 50 NIEKETYRESKNEKAARGLLYSAVQREL-SKSTFVICDALNYI-KGFRYQLYCESKSMYT 107
Query: 769 SQNVIHLAV 795
+ VIH+AV
Sbjct: 108 THCVIHVAV 116
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 313 NQNVSFEYTNFNSLTSVRKFVEGFRNTQLKLDVL----VLNNEVNASDKDVGISPHVSNY 480
+ ++ + YT+ N++TS + L+ D + ++ S D+ SP SN
Sbjct: 140 SHSLLYPYTSSNNMTSTSRMSGIHDALSLQSDFTRSPDMPSDSFTGSLHDIKASPFSSNN 199
Query: 481 YGQFLLTNLLVP 516
Y Q LL L+P
Sbjct: 200 YAQSLLDYFLLP 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,386
Number of Sequences: 5004
Number of extensions: 64631
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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