Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_M04
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   4.6  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   6.1  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   6.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   8.1  

>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 615 NKLAHSAFLATLTTCSTQKLVTTQKNFTRTTSG*TNAFMN 734
           +K+AHS  L  LT  +  K +  Q+N T      T+++ N
Sbjct: 161 SKIAHSGALGPLTRLAKSKDIRVQRNATGALLNMTHSYEN 200


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 121 FALLTFWFQLAEFTDPPCLIDLECAECIPDNMPLVTSHRATNGTFRIASGDEVVLACYGG 300
           F + +F    AE+ D  C + L+    IPD   LV++   ++  +   SG  V  A    
Sbjct: 170 FKVRSFPINYAEYADDECQLALKKIRPIPDKY-LVSTRVLSDSRYLELSGAVVAFAPDAS 228

Query: 301 KFLMYPLQE 327
             L++ L +
Sbjct: 229 SSLLFELAD 237


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 142 FQLAEFTDPPCLIDLECAECIPDNMPL-VTSHR---ATNGTFRIASGDEVVL 285
           + L +     CL D E   C+P NMPL V + R      G F I +G +  L
Sbjct: 734 YALHQLQPTDCLPDPENTGCLPINMPLCVRASRKFIEDGGAFLIVTGQKSYL 785


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 257 LKVPFVARCDVTKGMLSGMHS 195
           L+VPF  R + T   LSG+HS
Sbjct: 146 LEVPFRKRSESTSSSLSGLHS 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,550,212
Number of Sequences: 5004
Number of extensions: 74612
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)