Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_M04
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0883 + 22229278-22230009 30 2.1
10_08_1061 - 22622805-22622961,22623262-22623441,22623482-226234... 30 2.8
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 30 2.8
12_02_0680 + 21903520-21904093,21904474-21905162 29 3.7
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 29 3.7
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 29 6.4
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393... 29 6.4
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 6.4
06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646 28 8.5
>08_02_0883 + 22229278-22230009
Length = 243
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 436 ARHPRKHFPGNPAQANGATSHPCAL*NDLSHRQWLRSPAAGTSG--TCLRNMPA 281
ARH + FP N A A G++S +S RQ +PA TS T + ++P+
Sbjct: 111 ARHANRPFPANTAAAGGSSSS-----YSISQRQEAAAPARSTSNDDTAMSSVPS 159
>10_08_1061 -
22622805-22622961,22623262-22623441,22623482-22623489,
22623682-22623845,22623969-22624134
Length = 224
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 490 PGSGTHDLEMELRNAQPNARHPRKHFPGNPAQANGAT 380
PG+ EMELR A + +HP H P +PA +G T
Sbjct: 185 PGAAMLIDEMELRQA--DEQHPGVHAPQSPAAVSGVT 219
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 452 QCSTECKTSSKTLSWQPSSSKWRNFASLRTLKRPISQTVVK 330
+C + SKT++ P S ++ ++L KRP+ TV K
Sbjct: 683 RCDKNAISDSKTVALHPLPSSFKGLSALLVDKRPVRATVTK 723
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 576 VCDVESEGDGAVLVEADGGEMAHAA 502
V D+ +GDG++LV+ GE H A
Sbjct: 185 VIDIAKQGDGSILVKTSSGEEFHGA 209
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 154 EFTDPPCLIDLECAECIPDNMPLVTSHRATNGTFRIASGDEVVLACYGGKFLMYPLQETL 333
E T P + A IP +T+ RA +GT RI+ G V++ GG + +Q +
Sbjct: 140 ELTSKPSTLSHVEASAIP--FAALTAWRALHGTARISEGQRVLVIGGGGAVGLAAVQLAV 197
Query: 334 TTVCEI 351
C +
Sbjct: 198 AAGCSV 203
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 459 SISRSCVPDPGARLTQRAPSXXXXXXXXXXXXXQTPHHKRTQEPPPAWLPTPNKL 623
S+S S P P RL R P+ TP H+RT+ PP + P+ + L
Sbjct: 14 SLSLSRTPPPRRRLRLRTPTPCHRASTTRRAL-HTPPHQRTRLPPLSVAPSASPL 67
>08_02_0501 + 17836948-17837373,17837857-17839184,17839270-17839380,
17839719-17839998,17840275-17840396,17840451-17840556,
17840814-17841020,17841130-17841255,17841719-17841817,
17842265-17842456,17842555-17843073
Length = 1171
Score = 28.7 bits (61), Expect = 6.4
Identities = 28/94 (29%), Positives = 38/94 (40%)
Frame = +2
Query: 572 QTHPGTTSGMAPHTEQTGPLSILGNFNHMFDAKTRHDAEKLYSDDVRMNKRLHELLKHDK 751
+ H G +SGMAP+ EQ G L + K L D N H L+ K
Sbjct: 782 EEHNGESSGMAPY-EQIG--RKLEDARRQILQKGTSAPFALIIDG---NALTHALMGGLK 835
Query: 752 FSFADQSLTSAKILSSHYFDDQNMXVTDFVSNRI 853
+F D ++ A +L Q +T V NRI
Sbjct: 836 TAFLDLAVDCASVLCCRISPKQKALITRLVKNRI 869
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 296 P*HASTTSSPDAILKVPFVARCDVTKGMLSGMHSAHSR 183
P H S+ S P + +PF++ CD G++ G S+
Sbjct: 371 PNHDSSHSKPAFLALLPFLSFCDEANGLIHGASQGTSK 408
>06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646
Length = 627
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 58 APQT*PHEHSTTFQFNMTWISFALLTFWFQLAEFTDPPC 174
AP+T P T F W LLT + F PPC
Sbjct: 109 APRTPPRRAELTGAFVFAWQGMLLLTVSAAMPVFRPPPC 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,747,540
Number of Sequences: 37544
Number of extensions: 572813
Number of successful extensions: 1793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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