Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_M02
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-10|CAB16516.1| 473|Caenorhabditis elegans Hypothetical p... 464 e-131
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 30 1.9
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 30 1.9
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 30 1.9
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 30 1.9
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 30 1.9
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 30 1.9
AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine re... 30 1.9
AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine re... 29 4.4
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 29 5.8
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 29 5.8
AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z99281-10|CAB16516.1| 473|Caenorhabditis elegans Hypothetical
protein Y57G11C.15 protein.
Length = 473
Score = 464 bits (1143), Expect = e-131
Identities = 217/240 (90%), Positives = 233/240 (97%)
Frame = +1
Query: 142 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 321
MGIKFLE +KPFC +PE++KPERKIQFREK+LWTAITLF+FLVCCQIPLFGIMS+DSAD
Sbjct: 1 MGIKFLEFVKPFCGFVPEVSKPERKIQFREKMLWTAITLFVFLVCCQIPLFGIMSTDSAD 60
Query: 322 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 501
PFYW+RVI+ASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
Sbjct: 61 PFYWLRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120
Query: 502 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 681
MVITVGQAIVYVM+G+YGEPSEIGAG+CLLI++QL +AGLIVLLLDELLQKGYGLGSGIS
Sbjct: 121 MVITVGQAIVYVMSGLYGEPSEIGAGICLLIVVQLVIAGLIVLLLDELLQKGYGLGSGIS 180
Query: 682 LFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALXHLLATRPDKVRALREAFYRQNXP 861
LFIATNICETIVWKAFSPAT+NTGRGTEFEGAVIAL HLLATR DKVRALREAFYRQN P
Sbjct: 181 LFIATNICETIVWKAFSPATMNTGRGTEFEGAVIALFHLLATRSDKVRALREAFYRQNLP 240
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 693 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 562
+NK +DT + + FLE+ +++ T + + +++ G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 693 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 562
+NK +DT + + FLE+ +++ T + + +++ G NFT
Sbjct: 190 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 693 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 562
+NK +DT + + FLE+ +++ T + + +++ G NFT
Sbjct: 609 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 652
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 693 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 562
+NK +DT + + FLE+ +++ T + + +++ G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 693 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 562
+NK +DT + + FLE+ +++ T + + +++ G NFT
Sbjct: 116 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 159
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 693 SNKQRDTRTQSISFLEQFIEQQHNKTGHKQLYDNEEAHSGTNFT 562
+NK +DT + + FLE+ +++ T + + +++ G NFT
Sbjct: 190 NNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSVGANFT 233
>AF025454-9|AAK68371.1| 331|Caenorhabditis elegans Serpentine
receptor, class i protein61 protein.
Length = 331
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 196 IAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVIL 348
IAK RK V+W + FI +C + LF D +IRV L
Sbjct: 119 IAKTLRKYIMPRWVVWCVLGFFIVYICAVVGLFSQTRRDEMHQMEYIRVNL 169
>AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein3 protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 157 LEVIKPFCSI--LPEIAKPERKIQFREKVLWTAITLFIFLVCCQ 282
L V FC + LP IQ R + + AI+L+IF +C Q
Sbjct: 52 LSVSHIFCLLFELPNAVLLFTGIQLRRNICFPAISLYIFFICAQ 95
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -3
Query: 767 NSVPRPVLTVAGENAFHTMVSQMFVAINREIPEPNPYPFWSNSSSNNTIRPATNSCMIMR 588
N+ R L+V+ + H + + R IP P+ P +SSS+ TI +S +
Sbjct: 43 NTSARSRLSVSSAQSPHCFLPTTRDSSPRSIPSPSLVPMRPDSSSDITINELHHSPLSHT 102
Query: 587 RHTPAPISL 561
TP P +
Sbjct: 103 GSTPEPTEI 111
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 636 EQQHNKTGHKQLYDNEEAHSGTNFTGFAIHSSHYINNSLTNSN 508
+QQH K G+ + ++N + + + + FA S + NN+ SN
Sbjct: 54 QQQHFKMGYSENFENFDENGSSGYNNFA-DSGNGFNNNGAESN 95
>AL032660-1|CAA21752.1| 711|Caenorhabditis elegans Hypothetical
protein Y70G10A.2 protein.
Length = 711
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 609 KQLYD--NEEAHSGTNFTGFAIHSSHYINN 526
K +Y+ +EAH+ TNF I SHY NN
Sbjct: 679 KDIYELTRDEAHAQTNFMNSIILFSHYGNN 708
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,026
Number of Sequences: 27780
Number of extensions: 471254
Number of successful extensions: 1388
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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