Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_L19
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    30   1.9  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    30   1.9  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    30   1.9  

>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 641 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 745
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 641 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 745
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 641 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 745
           +++P       IHKE   F YK+N   A+LY   E
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,203
Number of Sequences: 27780
Number of extensions: 312384
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)