Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_L16
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    37   0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.025
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.70 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -2

Query: 422 GGFGG-GXGXGXXXPXPXXXGXXGGPXGXXXXGGXXXXVXGXPXXXAGGXRGF 267
           GGFGG G G G   P P   G  GG  G     G      G P    GG  GF
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF 240



 Score = 35.5 bits (78), Expect = 0.011
 Identities = 33/98 (33%), Positives = 33/98 (33%)
 Frame = -2

Query: 563 GXFXGFGPXGGPLXKXFXRGXPPXLGXXXXPPWXGGXPXPPPEXXGXGGFGGGXGXGXXX 384
           G F GFG   G        G PP  G        GG         G GGFGGG G     
Sbjct: 188 GGFGGFGGGSG--------GPPPGPGGFGG---FGGFGGEGHHHGGHGGFGGGPGGFEGG 236

Query: 383 PXPXXXGXXGGPXGXXXXGGXXXXVXGXPXXXAGGXRG 270
           P     G  GGP G    GG      G P    GG  G
Sbjct: 237 P----GGFGGGPGG---FGGGLGGFGGGPGGFGGGPGG 267



 Score = 34.3 bits (75), Expect = 0.025
 Identities = 27/80 (33%), Positives = 27/80 (33%)
 Frame = -2

Query: 461 GGXPXPPPEXXGXGGFGGGXGXGXXXPXPXXXGXXGGPXGXXXXGGXXXXVXGXPXXXAG 282
           GG   PPP   G GGFGG  G G         G  GGP G            G P    G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGG--HGGFGGGPGGFE----------GGPGGFGG 242

Query: 281 GXRGFFXXXKEVXPXPXGXG 222
           G  GF          P G G
Sbjct: 243 GPGGFGGGLGGFGGGPGGFG 262



 Score = 33.5 bits (73), Expect = 0.043
 Identities = 27/79 (34%), Positives = 27/79 (34%)
 Frame = -2

Query: 458 GXPXPPPEXXGXGGFGGGXGXGXXXPXPXXXGXXGGPXGXXXXGGXXXXVXGXPXXXAGG 279
           G P P P   G GGFGG  G G         G  GGP G     G      G P    GG
Sbjct: 198 GGPPPGP--GGFGGFGGFGGEGHH--HGGHGGFGGGPGGFE---GGPGGFGGGPGGFGGG 250

Query: 278 XRGFFXXXKEVXPXPXGXG 222
             GF          P G G
Sbjct: 251 LGGFGGGPGGFGGGPGGHG 269


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
 Frame = +1

Query: 271 PLXPPAXXXGXPX-TXXXXPPXXXXPXGPPXXPXXXGXGFXXPXPXPPPKPPXPXXSGGG 447
           P  PPA     P       PP      GPP  P   G     P P PPP PP     G  
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP-PPAVSAGGSR 791

Query: 448 XGXPPXQ 468
              P  Q
Sbjct: 792 YYAPAPQ 798



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 394 PXPXPPPKPPXPXXSGGGXGXPPXQG 471
           P P P P PP     GG    PP  G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 20/79 (25%), Positives = 22/79 (27%)
 Frame = +1

Query: 271  PLXPPAXXXGXPXTXXXXPPXXXXPXGPPXXPXXXGXGFXXPXPXPPPKPPXPXXSGGGX 450
            P+  P+     P      PP      G P  P         P P P   PP P  S G  
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG--VPPVPPPSEAPPVPKPSVGVP 1208

Query: 451  GXPPXQGGXKXXPKXGGXP 507
              PP            G P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLP 1227



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/64 (28%), Positives = 18/64 (28%)
 Frame = +1

Query: 271  PLXPPAXXXGXPXTXXXXPPXXXXPXGPPXXPXXXGXGFXXPXPXPPPKPPXPXXSGGGX 450
            P  P A     P      PP        P  P         P P P   PP P  S G  
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVP---STAPPVPIPTSTPPVPKSSSGAP 1060

Query: 451  GXPP 462
              PP
Sbjct: 1061 SAPP 1064


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/68 (26%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
 Frame = +1

Query: 271 PLXPPAXXXGXPXTXXXXPPXXXXPXGPPXXPXXXGXGFXXPXPXPPPKPP----XPXXS 438
           P  PP        T     P    P  PP  P           P  PP PP     P   
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

Query: 439 GGGXGXPP 462
            G    PP
Sbjct: 461 AGMPAAPP 468



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +2

Query: 644 PPGXXXXPGXSPRXTPPWXPPXSXXGXKGNXCPXFPWGXGGXPXXPP 784
           P G        P  TPP  PP +      +  P  P G    P  PP
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +1

Query: 271 PLXPPAXXXGXPXTXXXXPPXXXXPXGPPXXPXXXGXGFXXPXPXPPPKP 420
           P  PP+   G P      P     P  P   P         P P P P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 343 PXGPPXXPXXXGXGFXXPXPXPPPKPP 423
           P  PP  P   G  F  P   PPP PP
Sbjct: 6   PGNPPPPPPPPG--FEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 638 GXPPGXXXXPGXSPRXTPPWXPPXSXXGXKGNXCP 742
           G PP     PG  P   PP  PP      + N  P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = -2

Query: 428 GXGGFGGGXGXGXXXPXPXXXGXXGGPXGXXXXGGXXXXVXGXPXXXAGGXRG 270
           G GGF GG G           G  GG  G     G      G      GG +G
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,200
Number of Sequences: 5004
Number of extensions: 23280
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)