Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_L15
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    29   0.95 
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   5.1  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   6.7  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   6.7  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 597 QDYKDTRRFPLEAP-SCALLFRPCRLRIPVRLSPFGKRG 710
           Q+ K+  R  +E+P   +L+++ CRLR+P  +  FG  G
Sbjct: 612 QEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPG 650


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 619 VSPWKLPRALSCSDPAAYGYLSAFLPSGSVALSHSSRCRYLSSV 750
           + P K+P++L  + P    Y+S+ L +       +++ R+L SV
Sbjct: 148 IRPSKIPKSLPSNSPVRLPYISSLLSAVFEINMENAKIRHLPSV 191


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 668 LTDTCPPFSLREAWRFLIAHAVGISVRCRSXAPSWAVCTNPPFSPTXGPYPV 823
           L +T  PFS++   RF I HA   +VR    A  W +  +  F     P+ +
Sbjct: 438 LVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 680 CPPFSLREAWRFLIAHAVGISVRCRSXAPSWAVCTNPPFSPTXGPYPVTIV 832
           C  F +R    +++  A  +     + + +W VCT+   + T   YP  IV
Sbjct: 138 CFDFRVRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAYKTYTMLKYPAHIV 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,409
Number of Sequences: 5004
Number of extensions: 67093
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)