Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_L04
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 31 1.6
11_06_0610 - 25449085-25453284 29 3.7
07_01_0378 + 2826421-2826427,2827286-2827375,2827400-2827639,282... 29 3.7
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 4.9
10_08_0226 - 16001958-16002527 29 6.5
07_01_0329 - 2318000-2318473 29 6.5
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 28 8.6
05_03_0164 - 9078814-9079908 28 8.6
03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748 28 8.6
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 8.6
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -2
Query: 299 SFSKESIIVLSQSAKDLASPHLFVPSDVXEGVALRIAR*SSNLPRNQK 156
++ +S + + A DL++PHL +PS + +G L SS L N+K
Sbjct: 130 AYDDDSQLEVDFGALDLSTPHLTLPSSIGKGAHLVSRFMSSKLTDNKK 177
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = -3
Query: 370 KTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLS 227
K+L P A PVSLP +K SL P P +P S P V K+LPPP +S
Sbjct: 1262 KSLPPPA-PVSLPPPPVK-SL--P--PPAPVSLPPPVVKSLPPPAPVS 1303
>07_01_0378 +
2826421-2826427,2827286-2827375,2827400-2827639,
2827722-2828035,2828604-2828696,2828789-2828977
Length = 310
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
Frame = +3
Query: 168 RKITRSAGNPQGDTLXDVTWDKQMGGGKVFGTLGQN---DDGLFGKAGYNREIFNDDRGK 338
R ++ + NP + W + G G +G G N G FG + ++ +
Sbjct: 82 RNLSANVNNPVSRPMPQRPWQQTSGYGNTYGGYGSNMYSSYGGFGNTYGSGGLYGNSMYS 141
Query: 339 LTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 497
G YG + G G YGG + + +GG GM G G
Sbjct: 142 SYGGGYGGSLYGGSG---MYGGGMYNSGLGGSYGGYGMGGMGGMGGMGGMGMG 191
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 387 STNYGGRLDWANKNAQATIDLNRQI 461
S+ +GG L W N + ++T+D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>10_08_0226 - 16001958-16002527
Length = 189
Score = 28.7 bits (61), Expect = 6.5
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Frame = +3
Query: 240 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQA-YGTRVLGPGGDSTNYGGRLDW 416
G G G++ Q G G + G + G YGT G + GG
Sbjct: 91 GQGSSSGSVSQGG-GSASAGGGGGGVAGGQAGGVDGSGGYGTGTGSGTGSAAADGGASPT 149
Query: 417 ANK---NAQATIDLNRQIGGRSGMTASGSG 497
++ NA AT D N GG+SG + SG G
Sbjct: 150 SSPPYANANATGDGNGNGGGQSGGSGSGGG 179
>07_01_0329 - 2318000-2318473
Length = 157
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -3
Query: 196 GLPADRVIFRVIRRSVNFCVNTHQSCSEDIKQDLYSF 86
G+P V +V+ + + +CV H + +ED +++L SF
Sbjct: 48 GVPLPNVASKVLAKVIEYCVK-HAAAAEDEEKELKSF 83
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 240 GGGKVFG-TLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDS-TNYGGRLD 413
G G G T+G +DDG K + + + G+ G A G R G GG N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236
Query: 414 WANK 425
+K
Sbjct: 237 PPHK 240
>05_03_0164 - 9078814-9079908
Length = 364
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 366 VLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGGMV 545
V+G G +++ LD+ + A A + NR+ G ++ G + L N H S G
Sbjct: 85 VVGDAGATSDGLLLLDFTDIRATARVVANRRAGAQAQAQQQGKKLTGLSFNLHNSRGDTQ 144
Query: 546 SKEFG--HKRPDV 578
+E + PD+
Sbjct: 145 ERELAGVNTNPDI 157
>03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748
Length = 414
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 66 AKLDTTQNEYKSCFISSLQLWCVLTQKFTDLLITRKITRSAGNPQGDTLXDVTWDKQMGG 245
AKL+ T +EY + L ++K+ L++ R S GD D W K+MGG
Sbjct: 299 AKLEVT-DEYVKSTVDFLA-----SRKWPSLVVDRTYIVSDITSVGDDKLDFGWGKRMGG 352
Query: 246 G 248
G
Sbjct: 353 G 353
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 8.6
Identities = 25/70 (35%), Positives = 29/70 (41%)
Frame = -3
Query: 346 PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSXRVSP*GLPADRVIFR 167
P S+P S S+ P P+ PS P VP+ LP P SP G P RV F
Sbjct: 9 PKSVPSGSS--SMKPPRPPRGPSFQAPAVPRPLPEP----------SSPGGRPRKRVRFA 56
Query: 166 VIRRSVNFCV 137
S CV
Sbjct: 57 SEASSHQICV 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,511,406
Number of Sequences: 37544
Number of extensions: 496184
Number of successful extensions: 1368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -