Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_L03
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.54 
10_08_0223 - 15986763-15987575                                         31   1.2  
01_01_1008 - 7987936-7988628,7988923-7989102                           31   1.6  
12_02_1188 + 26801833-26802225                                         29   3.8  
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448...    29   3.8  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    28   8.7  
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032     28   8.7  

>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 532 LRPPDEHHKNRRSSQRWRN--PTGLXRYQAFPPGKLPRALSCSDPAAYRIP 678
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = -3

Query: 697 EGXKGGQVSGKRQGRNRRAHEGAXQGE-TPGIXIVLSGFATS--DLSVDFCDARQGGGA- 530
           EG  GG   G   G    A  G  QG    G  I ++   +S  D +  + DA  GGG  
Sbjct: 138 EGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSSIAMAPSPSSGGDYNGGYADAAGGGGGG 197

Query: 529 ---YGKTPATRPFYGSWPFAG 476
              +G  PA  P YG    AG
Sbjct: 198 GGGHGGGPAASPSYGVGAGAG 218


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 685 GGQVSGKRQGRNRRAHEGAXQGETPG 608
           GG+V+G+   R+RR   GA +GE  G
Sbjct: 249 GGEVNGEEAARSRRRRRGAWEGEEEG 274


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 694 GXKGGQVSGKRQGRNRRAHEGAXQGETP 611
           G  GG  SGKR      AHEG  +G  P
Sbjct: 30  GGGGGGSSGKRSSSAAAAHEGVPEGHVP 57


>12_02_0615 +
           21242819-21243201,21244510-21244630,21244728-21244847,
           21245015-21245245,21245365-21245862
          Length = 450

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 700 PEGXKGGQVSGKRQGRNRRAHEGAXQGETPGIXIVLSGFATSDLSVDFCDA-RQGGGAYG 524
           P G KGG   G   G+ R + E   + E   + ++    A    SV  C   R+GGG +G
Sbjct: 9   PSGCKGGGGGGGGVGKKRGSGEEERERERQQLSVLEVLLAAVRRSVVACRVEREGGGGWG 68

Query: 523 K 521
           +
Sbjct: 69  E 69


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 292 NESAN---ARGEAVCVLGALPLPRSLTRCAR 375
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 538 PPDEHHKNRRSSQRWRNPTGLXRYQAFPPGKLPRALSCSDPAA 666
           PP  HH +RR  +  + P    + Q  PP  LP      +PAA
Sbjct: 40  PPHHHHHHRRRHRHSKKPKPQPQPQP-PPPPLPPQQQQQEPAA 81


>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
          Length = 429

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 681 PP--FXPSGSVALSHSSRCRYXSSGVGRSPQAGLCARTPRSXR 803
           PP  F  +  +A +  SRC   S G GR+P+   C R PR  +
Sbjct: 39  PPNRFSSARRLAAAVGSRCS-KSGGSGRAPRLSSCLRRPRGEK 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,406,382
Number of Sequences: 37544
Number of extensions: 463837
Number of successful extensions: 1244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)