Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_K15
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    28   1.9  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   3.4  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   5.9  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   7.8  

>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 802 TTTITPVFFHKRPVFATMLSVTISEXKPSII 710
           TT +T  FF+++  F+  L   I E +PSI+
Sbjct: 11  TTIVTNAFFNQKANFSIPLKGVIGEKRPSIL 41


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 407 LCMKQYSHKRNTDFLFIQFRIRDSVHEITISTKSLHILHSIH--INLQSFKLTFLII 243
           + +K Y H+  T  L   F    SV  + +S  SL +LH++   + +Q+ K   ++I
Sbjct: 248 VAVKHYVHEYPTLDLIYIFSALMSVFCLLLSVASLELLHTVQEVVGMQAIKFFIVLI 304


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 478 NLTPRTAIKIHVPRPKFFHSNMASCV*NSTLTNETLISYLYSSELETQ 335
           NL   TAI   +   +   SNMAS +  S  + E + SY  + + ETQ
Sbjct: 530 NLGNLTAISETLENGQTLKSNMASSIEKSKTSTEVVASYDTTLDEETQ 577


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 628 IFRHKTCNPLDFVSAFNATIIRKKSTKAPKKLFWFYAGH 512
           I+R +  NP++    F  ++   KS+K P KLFW    H
Sbjct: 440 IWRSRLTNPVN-KWYFERSVGSLKSSKTPWKLFWTGDSH 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,130
Number of Sequences: 5004
Number of extensions: 59560
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)