Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_K13
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 222 6e-59
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 109 5e-25
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 92 1e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 91 2e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 89 6e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 82 9e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 82 9e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 78 1e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 75 2e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 71 3e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 66 5e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 2e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 64 2e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 62 8e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 62 1e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 61 2e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 57 3e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 55 1e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 3e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 37 0.003
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.7
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 222 bits (542), Expect = 6e-59
Identities = 106/162 (65%), Positives = 125/162 (77%), Gaps = 2/162 (1%)
Frame = +1
Query: 238 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 417
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 418 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 597
LCQAKSGMGKTAVFVL+TLQQ+EP + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 598 SVFFGGMPIQKDEEVL--KTACPHIVXGTPGXILALVNSKNL 717
+VF+GG+ I++D E K+ PHIV TPG + ALV K L
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKIL 193
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +3
Query: 714 LNLKHLKHFILDECDKMLXSLXMRRDVXXIXR 809
L + +KHF+LDECDK+L S+ MRRD+ + R
Sbjct: 193 LKVNSVKHFVLDECDKLLESVDMRRDIQEVFR 224
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 109 bits (262), Expect = 5e-25
Identities = 57/133 (42%), Positives = 84/133 (63%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 480
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 481 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 660
++ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 661 HIVXGTPGXILAL 699
HIV GTPG +L L
Sbjct: 164 HIVVGTPGRVLDL 176
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 91.9 bits (218), Expect = 1e-19
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Frame = +1
Query: 295 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 474
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 475 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 648
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 649 TACPHIVXGTPGXILALVNSKNLI*N 726
PH+V TPG + +++N NL N
Sbjct: 241 KH-PHVVVATPGRLWSVINENNLTGN 265
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 91.1 bits (216), Expect = 2e-19
Identities = 53/139 (38%), Positives = 74/139 (53%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 480
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 481 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 660
++ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 661 HIVXGTPGXILALVNSKNL 717
H+V GTPG + ++ + L
Sbjct: 139 HVVVGTPGRVHDMIQRRAL 157
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 89.4 bits (212), Expect = 6e-19
Identities = 51/141 (36%), Positives = 73/141 (51%)
Frame = +1
Query: 295 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 474
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 475 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 654
Q ++ S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 655 CPHIVXGTPGXILALVNSKNL 717
H+V GTPG + ++ +NL
Sbjct: 140 -QHVVSGTPGRVTDMIRRRNL 159
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 82.2 bits (194), Expect = 9e-17
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Frame = +1
Query: 268 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 447
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 448 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 618
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 619 PIQKDEEVLKTACPHIVXGTPGXIL 693
++ E+ L+ P IV TPG +
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFI 392
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 82.2 bits (194), Expect = 9e-17
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 480
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 481 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 660
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 661 HIVXGTPGXIL-ALVNSK 711
H++ TPG ++ L N+K
Sbjct: 166 HVLVCTPGRLMDHLENTK 183
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 78.2 bits (184), Expect = 1e-15
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Frame = +1
Query: 259 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 438
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 439 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 612
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 613 GMPIQKDEEVLKTACPHIVXGTPGXILAL 699
G+ +++ +L + P IV TPG L L
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFLHL 203
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 74.5 bits (175), Expect = 2e-14
Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 477
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 478 -----QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMS 585
Q++ ++ ++ L++ TRELA Q+ E+ + + S
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCS 116
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 70.5 bits (165), Expect = 3e-13
Identities = 37/136 (27%), Positives = 72/136 (52%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 480
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 481 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 660
S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 661 HIVXGTPGXILALVNS 708
H+V TPG + L+ S
Sbjct: 127 HVVVATPGRLADLIRS 142
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.5 bits (155), Expect = 5e-12
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Frame = +1
Query: 316 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 495
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 496 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 660
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 661 HIVXGTPGXILALVNS 708
IV TPG ++ ++++
Sbjct: 543 EIVVCTPGRMIDVLSA 558
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.5 bits (150), Expect = 2e-11
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 480
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 481 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 648
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 649 TACPHIVXGTPGXIL-ALVNSKNLI 720
+++ TPG +L L N+K +
Sbjct: 210 KGV-NLLVATPGRLLDHLQNTKGFV 233
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 64.5 bits (150), Expect = 2e-11
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 474
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 475 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 654
+++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 655 CPHIVXGTPGXILALVNSKNL 717
IV GTPG ++ L+ + L
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQL 250
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.5 bits (145), Expect = 8e-11
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Frame = +1
Query: 241 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 414
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 415 ILCQAKSGMGKTAVFVLATLQQ------LEPSESHVYVLVMCHTRELAFQISKEYERFSK 576
++ + +G GKT + L + L P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 577 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVXGTPGXILALVNS 708
S +R + +GG+P L I TPG +L +++S
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGRLLDMLDS 262
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 61.7 bits (143), Expect = 1e-10
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Frame = +1
Query: 316 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 477
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 478 QLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 651
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 652 ACPHIVXGTPGXIL 693
HIV TPG +L
Sbjct: 375 GA-HIVVATPGRLL 387
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 61.3 bits (142), Expect = 2e-10
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +1
Query: 355 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---PSESHVYVLVMCH 525
++ P+ +Q P + G D++ A++G GKT F + LQ L ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 526 TRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVXGTPGXILAL 699
TRELA Q YE + + G + V +GG P + K A ++ GTPG +L L
Sbjct: 245 TRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTPGRLLDL 299
Query: 700 VNSKNL 717
+N ++
Sbjct: 300 INDGSI 305
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 57.2 bits (132), Expect = 3e-09
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Frame = +1
Query: 352 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL---EP--SESHVYVL 513
GFE + VQ + + + + QAK+G GKT F+L + + +P + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 514 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVXGTPGXI 690
++ TRELA QI +E + + Y +G+RVS GG ++E ++ +++ TPG +
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 55.2 bits (127), Expect = 1e-08
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 480
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 481 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 648
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 649 TACPHIVXGTPGXIL 693
+I+ TPG +L
Sbjct: 160 RM--NILVCTPGRLL 172
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 47.2 bits (107), Expect = 3e-06
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Frame = +1
Query: 301 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 480
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 481 L---EPSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 627
+ + E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 628 KDEEVLKTACPHIVXGTPGXI---LALVNSKNL 717
D + P +V GTPG + L+ ++SK+L
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEMLSHISSKHL 155
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 373 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 549
+Q IP D+L A +G GKT ++ LQ+L+ Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 550 SKEYERFS 573
++ E+ S
Sbjct: 132 YRQAEKLS 139
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 418 LCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 549
+ Q G GK+ V + A LE + SHV +LV C T QI
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQI 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,727
Number of Sequences: 5004
Number of extensions: 65353
Number of successful extensions: 172
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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