Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_K10
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.40 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 335 IAKVSPIKLSAMDSNSVSPMPELAPIAEFDKSPPSPPNEEVPMDDLPPPP 484
           +++VSP+ +SA+ S   SP     P +     PP P      M  +PP P
Sbjct: 386 VSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSN--MSGMPPLP 433


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 121 SINVSELTATVPVSHRNKFNI*LLSRT**AKCVPIHSAD 237
           +I+VS L    P SH+    + LL      K + IHS+D
Sbjct: 139 NIHVSFLRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSD 177


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 95  CEARLSGVERGRRATQNLKEFPIVRSV 15
           CE R +G   G  +T   K FP ++ V
Sbjct: 64  CEGRSAGSIPGVNSTSENKTFPTIKIV 90


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 95  CEARLSGVERGRRATQNLKEFPIVRSV 15
           CE R +G   G  +T   K FP ++ V
Sbjct: 64  CEGRSAGSIPGVNSTSENKTFPTIKIV 90


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 334 FDDFLPPP 311
           FD+FLPPP
Sbjct: 316 FDEFLPPP 323


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 422 DKSPPSPPNEEVPMDDLPPPPATISQAEGKKIKVQRSR 535
           DKS  S  ++ + + D  P    I+  E +KIK++  R
Sbjct: 89  DKSNTSNTSKTIILSDKGPEGIQINATELQKIKLEIHR 126


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 474 HPHPPLSRRPKARRSKSNA 530
           HPHPP +  P+      NA
Sbjct: 466 HPHPPETPGPQVETILQNA 484


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 77  LTSALHTLQFSTASHQSTFRS*PQQFRFH-IAISLTSSYCRELNKRSACQY 226
           +TSA   L+        T     +  + H + +S  S Y REL K + C++
Sbjct: 18  ITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKH 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,592
Number of Sequences: 438
Number of extensions: 5349
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)