Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_K08
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   260   8e-70
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   259   2e-69
10_08_0456 - 18072618-18072718,18072837-18073016,18073425-180735...    30   2.1  
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    29   6.6  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  260 bits (638), Expect = 8e-70
 Identities = 134/236 (56%), Positives = 162/236 (68%), Gaps = 4/236 (1%)
 Frame = +1

Query: 88  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 267
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 268 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 441
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 442 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAXEGKENAKPRHK 615
            ++PGLTD   PR  GPKRASKIRKLFNL+K+DDVR+YV   +R      GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 616 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESXVRRQEKI 783
           APKIQRLVTP+ LQ                 S  AEY KLLAQR KE   RR E +
Sbjct: 177 APKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  259 bits (635), Expect = 2e-69
 Identities = 134/236 (56%), Positives = 161/236 (68%), Gaps = 4/236 (1%)
 Frame = +1

Query: 88  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 267
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 268 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 441
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 442 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAXEGKENAKPRHK 615
            ++PGLTD   PR  GPKRASKIRKLFNLSK+DDVR+YV   +R      GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 616 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESXVRRQEKI 783
           APKIQRLVTP+ LQ                 S  AEY KLLAQR KE   RR E +
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>10_08_0456 -
           18072618-18072718,18072837-18073016,18073425-18073513,
           18074381-18074547,18074880-18075800
          Length = 485

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
 Frame = -1

Query: 295 LSGRPVSS--GILACRCRQRHE--VHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTT 128
           ++  PVS   G+   RCR+ H+    SPS+ R      L R  A  +R+   +RP     
Sbjct: 1   MAAPPVSDELGLARARCRELHDRVAASPSLQRHPALRSLLRLVAAEQRFLDSSRPDQGAP 60

Query: 127 SGIPLPGTKRLTS*LXVNPVERQPMKKSKILRIPYS 20
               LP    L   L  +P  R P + + +  + ++
Sbjct: 61  LSTNLPHLAALHLLLAAHPAVRCPSRLAPLPGVDFA 96


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/53 (24%), Positives = 31/53 (58%)
 Frame = +1

Query: 481 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAXEGKENAKPRHKAPKIQRLV 639
           ++ PK+A    ++ + + +DD+ R V  + +P+ +  + A+   ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,452,511
Number of Sequences: 37544
Number of extensions: 449493
Number of successful extensions: 1220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)