Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_K07
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    67   4e-12
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    31   0.22 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   3.6  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   4.7  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   6.2  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   8.2  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
 Frame = +3

Query: 150 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 326
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 327 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLXRHFCP 461
            F  K  GLT ++ W T N L + + + ++ A GL + +   F P
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSP 103



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 451 TFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQK 630
           TF+P T  KT  L     +  +  + +++      + D    + ++G+LAG    +D QK
Sbjct: 100 TFSPATAAKTAILNLEHQHPLIHTHASVNALERKFLGDFT--VGHEGFLAGAEFGYDVQK 157

Query: 631 AKFSKNNFALGY 666
              S     +GY
Sbjct: 158 GNVSNYAATIGY 169


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +3

Query: 84  APICVEFV----CEISTKFVNL*NTDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS 251
           APIC EF     CE+ T   N     +    YA  G   N   S  YH G    D+  ++
Sbjct: 288 APICFEFAKYGFCELGTSCKN--QHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQT 343

Query: 252 ESGVEFTSGITSNQESGKVFGSLS 323
           E+ +  T+G  + ++SG   GS S
Sbjct: 344 EAPISKTAGSINPEDSGSEIGSNS 367


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
 Frame = +1

Query: 43  FWSCWLGSAKIGRARQFAWNSSVK*VPSL*I----YKTQTWLPHIML----TLERRPMMS 198
           FWS W  +   GRA  + W  + + +P        + T     H+ L    T +    +S
Sbjct: 232 FWSYWTQAFDFGRAFDYKWTVNWRFIPRSIFESTSFSTSILFLHVALLVAFTCKHWNKLS 291

Query: 199 SARAITLVFSNST*RPRASLVLNSP 273
            A    +V S  T +P   L L +P
Sbjct: 292 RATPFAMVNSMLTLKPLPKLQLATP 316


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 246 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 395
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 293 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 186
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +1

Query: 244 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 336
           P   L +  P   +  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,817
Number of Sequences: 5004
Number of extensions: 62262
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)