Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_K04
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    37   0.003
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.51 
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    28   1.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   1.5  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   1.5  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.7  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   8.2  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +3

Query: 405 FLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITA 584
           F+S +V  GL++   + P N         +L  F    G+++G  + + S     II+ A
Sbjct: 102 FISLVVLFGLIMKPYSYPRN-------YIFLFLFTALEGLTLGTAITFFSA---RIILEA 151

Query: 585 LLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXSMSLMTLVNLFMQSH-FLYQAHLYL 761
           +  T  VFV  +A    + +  +            S+ L  L+  F+ S  F+  A    
Sbjct: 152 VFITLGVFVALTAFTFQS-KWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210

Query: 762 GLMLMCGFVLFDTQLIIEK 818
           G ++ CG++LFDT  I+ +
Sbjct: 211 GTLVFCGYILFDTYNILHR 229


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +3

Query: 249 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 428
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 429 GLMLMLIATPDN 464
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 91  ICLFYL*LVKLEYCCCVILKAINIL 165
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 91  ICLFYL*LVKLEYCCCVILKAINIL 165
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFILLLLGLIYCSKIVVKAIPLI 152


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 91  ICLFYL*LVKLEYCCCVILKAINIL 165
           ICLF L L+ L YC  +++KAI ++
Sbjct: 128 ICLFVLLLLGLIYCSKIVVKAIPLI 152


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 693 MSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFV 845
           +++ +  N  ++  FL+ A +   L+L+  F +    L +E RR  +KD V
Sbjct: 328 LAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKDDV 378


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 788 YKTAHEHEAKIKMSLVQE 735
           Y TAH +E K K+ L+QE
Sbjct: 291 YPTAHPYEIKTKLYLIQE 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,407
Number of Sequences: 5004
Number of extensions: 72447
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)