Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_J20
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    27   0.23 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    24   2.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    24   2.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    24   2.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    24   2.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   2.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   2.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   2.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    24   2.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 649 AYVCR*GRCSNYIQIS 602
           +Y CR GRCS+Y+Q+S
Sbjct: 50  SYACR-GRCSSYLQVS 64


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 501 STVSFS*TFDSISSKQNCVFSASFLT 578
           ST+ +  T+DSI ++ + +F   F+T
Sbjct: 161 STIDY--TYDSIEARDSAIFDGDFIT 184


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 197 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 208 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 208 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 197 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 208 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 197 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 213 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 250


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 208 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 208 KKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -2

Query: 257 VLDVSRLLSCSTRHTQFLMRFSSKPCFLSXCTRPQTRERFGFRTNAEDNQSE 102
           +L  ++L S   +H+ +L +   +    S       +ERFG+ ++ +D+Q +
Sbjct: 82  ILSPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQ 133


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 175 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 288
           +K+    N +RN     +H SSR + +   +R+ +++Y
Sbjct: 208 KKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREY 245


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 181 ASSAHARDRRXVNVLASEPTQ 119
           AS+ + RD++ V +L  EP Q
Sbjct: 889 ASNLYGRDQQLVQLLVQEPPQ 909


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 181 ASSAHARDRRXVNVLASEPTQ 119
           AS+ + RD++ V +L  EP Q
Sbjct: 885 ASNLYGRDQQLVQLLVQEPPQ 905


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 517 LKLTVEFSSC*YQAESPGSGSSN 449
           L+ T E+++    AES GSGS+N
Sbjct: 446 LRATKEYNTVPIIAESYGSGSTN 468


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 517 LKLTVEFSSC*YQAESPGSGSSN 449
           L+ T E+++    AES GSGS+N
Sbjct: 446 LRATKEYNTVPIIAESYGSGSTN 468


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 517 LKLTVEFSSC*YQAESPGSGSSN 449
           L+ T E+++    AES GSGS+N
Sbjct: 446 LRATKEYNTVPIIAESYGSGSTN 468


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 785 LNDIPEFLSKRCAPDLNTQSACLVRVF*HSR 693
           L   P F   RC P+++    C+  +  H++
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTK 499


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 785 LNDIPEFLSKRCAPDLNTQSACLVRVF*HSR 693
           L   P F   RC P+++    C+  +  H++
Sbjct: 469 LRSPPAFSHSRCPPEIHKSCICVRFIAEHTK 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,516
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)