Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_J18
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 235 KLDSVLSSKKTESNAVTECP*KRPDVGSTAENVSRKATAVNL*YMKKLQTV 387
           K  ++ +  +TESNA +     R   G+T E +  +    N+   ++ Q++
Sbjct: 219 KSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSL 269


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = +3

Query: 240 GLCPKQQKDGIECCYGVSVKETRCRKHGGEC 332
           G+C +  +     C G S ++  C K    C
Sbjct: 77  GICAEGMQCSCNKCIGCSAEKFECSKTSNPC 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,862
Number of Sequences: 438
Number of extensions: 2849
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)