Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_J05
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    39   8e-04
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    34   0.023
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.87 
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   4.6  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   6.1  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
 Frame = +1

Query: 433 NPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQNGHCSGRECVCRD 612
           NP  C+    K    +LC   +   C+  H KNAG  C  +     +   C+G    C  
Sbjct: 338 NP-CCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLCRQSTNPCDKPEFCTGISSKCPV 396

Query: 613 GFKLDYGRKYCVPLCSNNCAGVGNCTSPNR-CDCAPGYQ--ATHDGSCSPKCRD 765
               D GR     L   +CA  G CTS +R C     +   + H  SC   C++
Sbjct: 397 DENWDDGRICQDSLGMGSCAS-GVCTSASRQCKKLTNFSSLSCHSDSCKVSCQN 449


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 425 TSTTLTFASRTAAKDASTH-CARRPKSARASLTTSRTPAASA--SLHARLDVKMATAPVE 595
           T+T     S+     A  H  AR+P S     TT  TPA SA  S HAR   K A+AP  
Sbjct: 464 TTTASKRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSS 523

Query: 596 SASAGMAL 619
             +   A+
Sbjct: 524 PGTTSAAV 531


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 425 TSTTLTFASRTAAKDASTHCARRP-KSARASLTTSRTPAASASLHARLDVKMATAPVESA 601
           TS++L  +S T++  AS+        S+  + TTS TP +SA+  +      + +   S+
Sbjct: 135 TSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSS 194

Query: 602 SAGMALS*TTDVNTVCHFAVTTA 670
            A  +L+ TT          +TA
Sbjct: 195 LASSSLNSTTSATATSSSLSSTA 217


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 412 GYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGF 543
           G   NI+  N   P  ++  + +L TA     CFP   KN G F
Sbjct: 85  GMAGNIFARNRIAP--ARWLITSLSTAATFMFCFPKTSKNIGAF 126


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +2

Query: 425 TSTTLTFASRTAAKDASTHCARRPKSARASLTT--SRTPAASASLHARLDVKMATAPVES 598
           TS+T +  S +++  +S+  + RP S+ + +TT  S T  ++ ++         ++ V S
Sbjct: 211 TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS 270

Query: 599 ASAGMALS 622
           ++A +AL+
Sbjct: 271 STAALALN 278


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 30  ESLKILVVSAFVTRGRL-DPDTQLGNNVDYICARALAGIHRRSVREVGGQRWLRRSRLPR 206
           E  ++ +++ F+ + R  DPD   G++ +   +  L+ +  R +        LRRS  PR
Sbjct: 599 ERSEVSLLNNFLNKVRTYDPDVYFGHDFEMCYSVLLSRLKERKIHNWSSIGRLRRSEWPR 658

Query: 207 *HQ*EHRQILREQ 245
                 +Q + +Q
Sbjct: 659 SFNRSSQQFVEKQ 671


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 649 PLCSNNCAGVGNCTSPNRCDCAPGY 723
           P     C     C SPN  +C PGY
Sbjct: 365 PSLCRTCPPNAICPSPNYVECKPGY 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,656,679
Number of Sequences: 5004
Number of extensions: 79345
Number of successful extensions: 242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)