Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_J03
(921 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein. 122 2e-27
BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28 p... 122 2e-27
BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28 p... 122 2e-27
BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28 p... 122 2e-27
U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28 pro... 121 4e-27
AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28 v... 71 6e-12
AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28 p... 48 4e-05
M34667-1|AAA36452.1| 1290|Homo sapiens protein ( Human phospholi... 31 4.5
DQ297143-1|ABB84466.1| 1291|Homo sapiens phospholipase C, gamma ... 31 4.5
AL022394-3|CAA18537.1| 1290|Homo sapiens phospholipase C, gamma ... 31 4.5
AL022394-2|CAM28260.1| 1291|Homo sapiens phospholipase C, gamma ... 31 4.5
AB210028-1|BAE06110.1| 1412|Homo sapiens PLCG1 variant protein p... 31 4.5
>CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein.
Length = 137
Score = 122 bits (294), Expect = 2e-27
Identities = 58/122 (47%), Positives = 81/122 (66%)
Frame = +2
Query: 137 LNWMIIRNNNAFLMKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 316
L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D KG V
Sbjct: 5 LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62
Query: 317 VYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 496
V K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAILRSQ+
Sbjct: 63 VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
Query: 497 PI 502
P+
Sbjct: 123 PV 124
>BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 122 bits (294), Expect = 2e-27
Identities = 58/122 (47%), Positives = 81/122 (66%)
Frame = +2
Query: 137 LNWMIIRNNNAFLMKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 316
L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D KG V
Sbjct: 5 LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62
Query: 317 VYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 496
V K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAILRSQ+
Sbjct: 63 VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
Query: 497 PI 502
P+
Sbjct: 123 PV 124
>BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 122 bits (294), Expect = 2e-27
Identities = 58/122 (47%), Positives = 81/122 (66%)
Frame = +2
Query: 137 LNWMIIRNNNAFLMKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 316
L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D KG V
Sbjct: 5 LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62
Query: 317 VYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 496
V K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAILRSQ+
Sbjct: 63 VIKRRSGQRKPATSYVRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
Query: 497 PI 502
P+
Sbjct: 123 PV 124
>BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 122 bits (294), Expect = 2e-27
Identities = 58/122 (47%), Positives = 81/122 (66%)
Frame = +2
Query: 137 LNWMIIRNNNAFLMKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 316
L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D KG V
Sbjct: 5 LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62
Query: 317 VYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 496
V K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAILRSQ+
Sbjct: 63 VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122
Query: 497 PI 502
P+
Sbjct: 123 PV 124
>U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 121 bits (291), Expect = 4e-27
Identities = 57/122 (46%), Positives = 81/122 (66%)
Frame = +2
Query: 137 LNWMIIRNNNAFLMKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 316
L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D KG V
Sbjct: 5 LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 62
Query: 317 VYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 496
V K+ RKPA + +R AR +L ++ +++ N YR DL A +RRASAILR+Q+
Sbjct: 63 VIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQK 122
Query: 497 PI 502
P+
Sbjct: 123 PV 124
>AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28
variant protein.
Length = 95
Score = 70.9 bits (166), Expect = 6e-12
Identities = 33/64 (51%), Positives = 45/64 (70%)
Frame = +2
Query: 137 LNWMIIRNNNAFLMKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTV 316
L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D KG V
Sbjct: 13 LQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVV 70
Query: 317 VYKK 328
V K+
Sbjct: 71 VIKR 74
>AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28
protein.
Length = 53
Score = 48.4 bits (110), Expect = 4e-05
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +2
Query: 362 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 502
+R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 4 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50
>M34667-1|AAA36452.1| 1290|Homo sapiens protein ( Human
phospholipase C-gamma mRNA, complete cds. ).
Length = 1290
Score = 31.5 bits (68), Expect = 4.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 559 LSAY-KLFRLGCGCLSLFCFDGPLG 488
L AY + R+GC C+ L C+DGP G
Sbjct: 350 LEAYARCLRMGCRCIELDCWDGPDG 374
>DQ297143-1|ABB84466.1| 1291|Homo sapiens phospholipase C, gamma 1
protein.
Length = 1291
Score = 31.5 bits (68), Expect = 4.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 559 LSAY-KLFRLGCGCLSLFCFDGPLG 488
L AY + R+GC C+ L C+DGP G
Sbjct: 350 LEAYARCLRMGCRCIELDCWDGPDG 374
>AL022394-3|CAA18537.1| 1290|Homo sapiens phospholipase C, gamma 1
protein.
Length = 1290
Score = 31.5 bits (68), Expect = 4.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 559 LSAY-KLFRLGCGCLSLFCFDGPLG 488
L AY + R+GC C+ L C+DGP G
Sbjct: 350 LEAYARCLRMGCRCIELDCWDGPDG 374
>AL022394-2|CAM28260.1| 1291|Homo sapiens phospholipase C, gamma 1
protein.
Length = 1291
Score = 31.5 bits (68), Expect = 4.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 559 LSAY-KLFRLGCGCLSLFCFDGPLG 488
L AY + R+GC C+ L C+DGP G
Sbjct: 350 LEAYARCLRMGCRCIELDCWDGPDG 374
>AB210028-1|BAE06110.1| 1412|Homo sapiens PLCG1 variant protein
protein.
Length = 1412
Score = 31.5 bits (68), Expect = 4.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 559 LSAY-KLFRLGCGCLSLFCFDGPLG 488
L AY + R+GC C+ L C+DGP G
Sbjct: 472 LEAYARCLRMGCRCIELDCWDGPDG 496
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,010,674
Number of Sequences: 237096
Number of extensions: 2174931
Number of successful extensions: 15370
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15320
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -