Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_I21
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...    85   6e-17
U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    29   3.4  
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 38/104 (36%), Positives = 60/104 (57%)
 Frame = +2

Query: 317 VLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKIY 496
           V    L +NF+ VEV++ D PDL++PP+  KS G   + ++ E+GGP  L P    D  +
Sbjct: 1   VFQTSLLSNFENVEVNIVDCPDLSKPPFNQKSSGFGHNLRIAEVGGPGNLYPGFHIDHQF 60

Query: 497 DLAKLLEHLNRDPAFLAGAGXGPWPYLGVNCEGIVNLXVRNGTV 628
           D+ K+ +      A + G G GPWP +G NCE + ++ ++ G V
Sbjct: 61  DIPKIGKVCEHPEAAVFGPGAGPWPIVGQNCEMVADVNLKTGEV 104


>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 208 LYETPRNXTXTIXLSDXLSHCFYYV-ILLVFIRKVCVHTYLRCTCVCXTLQL 56
           LYE P N T TI     +   F+   I+L+ I   C    LR  C   + QL
Sbjct: 21  LYECPENMTTTIIERPYIGTYFFVSGIILIIIYLPCFLAMLRSKCRAPSFQL 72


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 156 CHIVFIM*YCWYL*EKFVFTHTCVVRAFVXLY 61
           C+ + I  +C    E+  F   C+VRAFV LY
Sbjct: 38  CNSLIIYIFCKETKERTAFNVICMVRAFVNLY 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,830
Number of Sequences: 27780
Number of extensions: 313618
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)