Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_I20
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    80   5e-16
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    57   3e-09
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    56   9e-09
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    43   7e-05

>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 79.8 bits (188), Expect = 5e-16
 Identities = 34/87 (39%), Positives = 47/87 (54%)
 Frame = +1

Query: 415 FRSNLASMKKYMTELXGYDRLLPMNTGVEGGESACXIARKWGYXVXXIPEGQAXIXXAEX 594
           +        KY+TE  GY+ ++PMNTG E  E+AC +AR WGY    IP  +A I     
Sbjct: 89  YNDKFGPFAKYITEYFGYEMVIPMNTGAEAVETACKLARLWGYKAKKIPTDEAIILSCVD 148

Query: 595 NFWGRTLSAVSSSSXPTCYXGFXPXMP 675
           NF GRT+  +S S+ P     + P +P
Sbjct: 149 NFHGRTMGIISMSTDPDARDNYGPYLP 175


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +3

Query: 102 RRTKKVGITXQIWHTITVPLYVKWSKXWK*PNTQRILAHLCGKDAMKRSCVRIWSC--KR 275
           +RTKKVG+T +        L     K  +     R     CG++ +KR+   IW C  K 
Sbjct: 3   KRTKKVGVTGKYGVRYGASLRRDVRKI-EVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKG 61

Query: 276 CKXTVAXGAWVFSTTAASSCRSAVXXLREV 365
           CK  +A GAW  +T AA+S RS +  LRE+
Sbjct: 62  CKKVLAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +3

Query: 102 RRTKKVGITXQIWHTITVPLYVKWSKXWK*PNTQRILAHLCGKDAMKRSCVRIWSC--KR 275
           +RTKKVG+T +        L     K  +     R     CG+  +KR+   IW C  K 
Sbjct: 3   KRTKKVGVTGKYGVRYGASLRRDVRKI-EVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKG 61

Query: 276 CKXTVAXGAWVFSTTAASSCRSAVXXLREV 365
           C  T+A GAW  +T AA+S RS +  LRE+
Sbjct: 62  CSKTLAGGAWTVTTAAATSARSTIRRLREM 91


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 24/82 (29%), Positives = 40/82 (48%)
 Frame = +1

Query: 457 LXGYDRLLPMNTGVEGGESACXIARKWGYXVXXIPEGQAXIXXAEXNFWGRTLSAVSSSS 636
           + G  ++   N G E  E+A   ARK  +      EG++ I     +F GR+L ++S ++
Sbjct: 133 IAGPTKIFFANCGTEANETALKFARKAAFEKYG--EGKSQIVYFNNSFHGRSLGSLSITA 190

Query: 637 XPTCYXGFXPXMPGFILXPYNN 702
            P    GF P +P  +   YN+
Sbjct: 191 NPKYKRGFQPLLPDVVQAVYND 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,185
Number of Sequences: 5004
Number of extensions: 44760
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)