Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_I15
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.008
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.16
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 29 1.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.0
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 3.5
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 3.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.5
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 4.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 4.6
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 27 4.6
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 6.1
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 26 6.1
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 230 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 409
PS V N+ + + Q+ + P V+ A+P P+ATH P + + A A
Sbjct: 324 PSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAAA 383
Query: 410 L--NMP--EYQIQQVQPTSSN 460
L P Y +QQV+P + N
Sbjct: 384 LAKESPSHHYIMQQVRPETPN 404
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.16
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +2
Query: 278 SQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 457
S HQ P + VAP++ + P P+A V + AL++P+ + V P
Sbjct: 528 SVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVP 587
Query: 458 NV----VAPLSSQSLSLPKATVTQAIRQV 532
+V VAP+ ++ S+P+ V +V
Sbjct: 588 SVPQPPVAPVVPEAPSVPQPPVAPVAPEV 616
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 608 VAANSPGALAGLRFGDQILEINNVT 682
VA SP AGL GD+++ + NVT
Sbjct: 135 VAVESPAQEAGLCIGDELVHVQNVT 159
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 97 TVVGKTSEKIEL*IALFSGYFGLTI 171
T++G S K+EL +AL SGYF I
Sbjct: 589 TLIGCDSSKLELILALSSGYFQFCI 613
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 287 QAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVV 466
Q PS+ APQ PS S ++V P L + + +++ P Y Q + SS+ V
Sbjct: 263 QLAPSFAAPQAHPLPSHLSQSNVPPQL-SHSSVPSPAPPRSVSQPTYFSQPMPQFSSSFV 321
Query: 467 APLSS 481
SS
Sbjct: 322 PGTSS 326
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 446 PTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSP 625
P S +AP + SLS P+ T+ Q++ + L N + + + +G F V+A+ P
Sbjct: 298 PLQSPPLAPKTGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLP 357
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 377 MGMELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQA 520
M +S A N P Q +P ++ AP++S + ++ +AT A
Sbjct: 1012 MANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSA 1059
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 784 YISLEWPITNSHGDIICRSFLKDI-MTFIHCHSSNSDIID 668
Y++ P TN GDI S I +T IHCHSS ++D
Sbjct: 137 YVAYNSP-TNP-GDIYLASLDTAIPVTLIHCHSSAVQVVD 174
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 269 AQISQHQAPPSYVAPQLCATPSAPSATHV 355
A I+Q+ PS +AP + A SAPSA V
Sbjct: 1747 APINQNAYVPSNIAPAMGAMQSAPSAEAV 1775
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.6 bits (56), Expect = 4.6
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Frame = +2
Query: 236 LEDMKVDNMMRAQISQHQAPPSYVAPQ---------LCATPSAPSATHVYPTLGEYMGME 388
L ++ V N ++ + +A P Y+A + TP+ + T P G+Y G
Sbjct: 181 LNEVNVLNQLKLSAEETRAHPFYLAKGKSGENKNEWIINTPNWGTNTFSTPLKGDYQGQN 240
Query: 389 LSQAVIALNMPEYQIQQVQPTSSNVV 466
L+ AV AL++ + P N V
Sbjct: 241 LACAVTALDILSSSFSIMLPHVQNGV 266
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +2
Query: 230 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 409
PS D K ++ + + + P+ +P L A + + +L M S + A
Sbjct: 322 PSSNDTKQESSL-IDLMKLTEEPAVPSPSLPTNVPANQSLSMLSSLSNSMS---STSNGA 377
Query: 410 LNMPEYQIQQVQPTSSNVVAPLSSQSLSL 496
LN P Y + T+S++ + L S SL +
Sbjct: 378 LNSPSYSQAAIPNTNSSLTSILQSDSLMI 406
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = +2
Query: 248 KVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEY 427
++ + + ++ H PPS++ P+L + S P+ + + E + LS+ + + P
Sbjct: 358 RLSSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPG 417
Query: 428 QIQQVQPTSSNVVAPLSS 481
+ V TS++VV L++
Sbjct: 418 TGKTV--TSASVVYHLAT 433
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 108 PHNSFYFTHSRYIP 67
PH+ FYF HS IP
Sbjct: 139 PHDKFYFVHSYMIP 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,357
Number of Sequences: 5004
Number of extensions: 69544
Number of successful extensions: 192
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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