Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_I07
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    30   0.49 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   1.1  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 72  DGNMYAVFCLILISNYAFVQGEFVFKKKCRD--VDTSLCTVHNVMVEPCGEGPIFCALKK 245
           D + Y   C + +   A   GE   +   RD  V ++    H ++ +P   GP+ C L+K
Sbjct: 91  DCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRK 150

Query: 246 NKPYSI 263
            +  S+
Sbjct: 151 EQEISL 156


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 26/104 (25%), Positives = 41/104 (39%)
 Frame = +3

Query: 108 ISNYAFVQGEFVFKKKCRDVDTSLCTVHNVMVEPCGEGPIFCALKKNKPYSISLDVTPHF 287
           ISN  F+  E  F     D ++ L ++ N+ +      P+    ++N  +   L   P F
Sbjct: 198 ISNSDFLHRESSFSSLI-DEESKLASLRNLNINDRPPLPVLKNSERNLLHRQLLSNHPFF 256

Query: 288 SANKLHAVIKGDVQNQNTFSTTFTRSAEYSDLLNNTLAGRQANT 419
           S N +         N   +ST FT+    S LL N     +  T
Sbjct: 257 SQNNVSLST-----NSKNYSTDFTKIQSDSSLLQNRQQNHRIET 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,412
Number of Sequences: 5004
Number of extensions: 50029
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)