Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_I06
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical ...    37   0.016
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    34   0.12 
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    31   1.4  

>AC024777-1|AAF60563.1|  133|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.2 protein.
          Length = 133

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 707 LFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALELFIDFIGM 874
           +F+   FLY  +  LG +L   ++  D QLI+  RR  +  ++++  A  +F+D +GM
Sbjct: 65  IFLNWQFLYIVYAVLGALLCMFYLAIDIQLIMGGRRVEISPEEYIFAATHVFVDILGM 122


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 680 SMSLMTLV-NLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR--MGSKDFVQHALE 850
           S  +  L+  L     FLY  +  L  +LM  ++  D QL++  R+  +  +D++  A+E
Sbjct: 165 SFGIFALIFTLAFNWQFLYSVYSGLAALLMMFYLAIDVQLLMGGRKYELSPEDYIFAAME 224

Query: 851 LFIDFIGM 874
           +F+D + +
Sbjct: 225 IFLDILNI 232


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 660 VPPRNSQLPRSAS-IAAAEKHTNTRVVPSRAV 568
           +PPR+   PRS S +A + K + T V P R+V
Sbjct: 103 IPPRSMIFPRSTSMVAESRKESTTAVAPKRSV 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,172
Number of Sequences: 27780
Number of extensions: 397630
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)