Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_I04
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    43   5e-05
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    42   1e-04
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   4.5  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.0  

>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 135 IFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXSGEWFSLLINIP 314
           +   IF VI F +L+ DY NPID CN                        +W   L N+P
Sbjct: 24  MLLQIFCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLP 83

Query: 315 LILYHIHR 338
           L+++H ++
Sbjct: 84  LLVFHANQ 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 49/112 (43%)
 Frame = +3

Query: 105 FVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSXXXXXXXXXXXXXXXXXXXXXSG 284
           F +L+     I   ++  + + +LK D+ NPID                         SG
Sbjct: 8   FTSLMLTCANIMLQMYFTVMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLLSG 67

Query: 285 EWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREGWIK 440
            W + L+N+P++ ++      + +MS   ++D T+I   DV +S Q+  + K
Sbjct: 68  AWITFLLNVPMLAWN-----AKMIMSNTHMHDSTTIFK-DV-SSRQKRSFFK 112


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 106  NIRKGWKTKRHLQSFTNATQNL 41
            NIR GW+T  H+ ++ +  +NL
Sbjct: 1298 NIRSGWRTIFHILAYASKIENL 1319


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 324 YHIHRYYTRPVMSGPGLYDPTSIMNADVLTSCQREG 431
           +H+ RY+   V +  GLY   S  +   L  C R+G
Sbjct: 454 FHLERYHLHAVAAMGGLYQIMSSTHLKNLFFCSRKG 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,007
Number of Sequences: 5004
Number of extensions: 47076
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)